
Output Boilerplate for the "Add Labels and Attributes" Vignette Section
Source:R/user_helpers.R
admiral_labels_attrs_section.RdOutputs the standard markdown text used in ADaM-specific vignettes for the
"Add Labels and Attributes" section. This function is intended to be called
inside an R Markdown code chunk with results='asis' and echo=FALSE.
Value
No return value. The function outputs text directly to the console
or output stream via cat(), intended for use in R Markdown documents
with results='asis'.
Details
The outputted section describes how to add variable labels and other
metadata to ADaM datasets as a final step in the derivation process,
using the {metacore}, {metatools}, and {xportr} packages.
Examples
admiral_labels_attrs_section()
#> ## Add Labels and Attributes {#attributes}
#>
#> Note that attributes may not be preserved in some cases after processing
#> with `{admiral}`. The recommended approach is to apply variable labels
#> and other metadata as a final step in your data derivation process using
#> packages like:
#>
#> - [metacore](https://atorus-research.github.io/metacore/): establish a
#> common foundation for the use of metadata within an R session.
#>
#> - [metatools](https://pharmaverse.github.io/metatools/): enable the
#> use of metacore objects. Metatools can be used to build datasets or
#> enhance columns in existing datasets as well as checking datasets
#> against the metadata.
#>
#> - [xportr](https://atorus-research.github.io/xportr/): functionality
#> to associate all metadata information to a local R data frame,
#> perform data set level validation checks and convert into a
#> [transport v5 file(xpt)](https://documentation.sas.com/doc/en/pgmsascdc/9.4_3.5/movefile/n1xbwdre0giahfn11c99yjkpi2yb.htm).
#>
#> NOTE: Together with `{admiral}` these packages comprise an End to End
#> pipeline under the umbrella of the
#> [pharmaverse](https://github.com/pharmaverse). An example of applying
#> metadata and performing associated checks can be found at the [pharmaverse
#> E2E example](https://pharmaverse.github.io/examples/adam/adsl).