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Subjects With Adverse Events Leading to Treatment Discontinuation by Organ System and OCMQ (Narrow), Safety Population, Pooled Analysis (or Trial X)

FDA Table 13

table
FDA
safety
adverse events

FDA IG Shell

FDA IG example table shell

Programming Notes

Background and Instructions

Refer to Table 30: Subjects With Adverse Events Leading to Discontinuation for AEs leading to treatment discontinuation by organ system, OCMQs (narrow), and the specific preferred terms for these OCMQs.

Customization

Clinical reviewers may request a similar table of OCMQs (broad) leading to treatment discontinuation. Clinical reviewers may also request tables from Section 4.1 Optional Adverse Event Analyses to explore the data on specific subjects.

Output

  • Full Code
  • Table
  • ARD
Code
# FDA TABLE 13 ---------------------------------------------------------------
# Self-contained template. Run top-to-bottom to build the objects below.
# Used by tests via run_template() and published in the catalog.

library(dplyr)
library(cards)
library(gtsummary)

set.seed(1)
adsl <- pharmaverseadam::adsl
adae <- pharmaverseadam::adae

adae <- adae |>
  rename(OCMQ01SC = AEHLTCD) |>
  mutate(
    AESER = sample(c("Y", "N"), size = nrow(adae), replace = TRUE),
    OCMQ01NAM = sample(c("OCMQ1", "OCMQ2", "OCMQ3"), size = nrow(adae), replace = TRUE)
  )

adae$OCMQ01SC[is.na(adae$OCMQ01SC)] <- "NARROW"

# Pre-processing --------------------------------------------
adsl <- adsl |>
  filter(SAFFL == "Y") # safety population

data <- adae |>
  filter(
    # safety population
    SAFFL == "Y",
    # narrow OCMQ
    OCMQ01SC == "NARROW"
  )

sliced_data <- data |>
  count(AEBODSYS, sort = TRUE) |>
  slice_head(n = 3) |> # keep top 3
  pull(AEBODSYS)

data <- data |>
  filter(AEBODSYS %in% sliced_data)

tbl <-
  tbl_hierarchical(
    data,
    variables = c(AEBODSYS, OCMQ01NAM),
    by = TRT01A,
    id = USUBJID,
    denominator = adsl,
    label = list(AEBODSYS = "Organ System", OCMQ01NAM = "OCMQ (Narrow)")
  )

ard <- gtsummary::gather_ard(tbl)
Code
tbl
Organ System
    OCMQ (Narrow)
Placebo
N = 861
Xanomeline High Dose
N = 721
Xanomeline Low Dose
N = 961
GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS 21 (24%) 36 (50%) 51 (53%)
    OCMQ1 8 (9.3%) 23 (32%) 25 (26%)
    OCMQ2 11 (13%) 22 (31%) 26 (27%)
    OCMQ3 14 (16%) 26 (36%) 32 (33%)
NERVOUS SYSTEM DISORDERS 12 (14%) 25 (35%) 22 (23%)
    OCMQ1 3 (3.5%) 10 (14%) 11 (11%)
    OCMQ2 5 (5.8%) 12 (17%) 13 (14%)
    OCMQ3 7 (8.1%) 15 (21%) 8 (8.3%)
SKIN AND SUBCUTANEOUS TISSUE DISORDERS 21 (24%) 42 (58%) 42 (44%)
    OCMQ1 11 (13%) 18 (25%) 28 (29%)
    OCMQ2 14 (16%) 27 (38%) 25 (26%)
    OCMQ3 11 (13%) 25 (35%) 23 (24%)
1 n (%)
Code
withr::local_options(width = 9999, tibble.print_max = Inf)
print(ard, columns = "all")
$tbl_hierarchical
# An ARD data frame: 117 × 15
    group1 group1_level         group2   group2_level                                         variable  variable_level                                       context      stat_name stat_label     stat stat_fmt fmt_fun warning error  gts_column
    <chr>  <list>               <chr>    <list>                                               <chr>     <list>                                               <chr>        <chr>     <chr>        <list> <list>   <list>  <list>  <list> <chr>     
  1 <NA>   <NULL>               <NA>     <NULL>                                               TRT01A    Placebo                                              tabulate     n         n           86      86       0       <NULL>  <NULL> stat_1    
  2 <NA>   <NULL>               <NA>     <NULL>                                               TRT01A    Placebo                                              tabulate     N         N          254      254      0       <NULL>  <NULL> stat_1    
  3 <NA>   <NULL>               <NA>     <NULL>                                               TRT01A    Placebo                                              tabulate     p         %            0.339  33.9     <fn>    <NULL>  <NULL> stat_1    
  4 <NA>   <NULL>               <NA>     <NULL>                                               TRT01A    Xanomeline High Dose                                 tabulate     n         n           72      72       0       <NULL>  <NULL> stat_2    
  5 <NA>   <NULL>               <NA>     <NULL>                                               TRT01A    Xanomeline High Dose                                 tabulate     N         N          254      254      0       <NULL>  <NULL> stat_2    
  6 <NA>   <NULL>               <NA>     <NULL>                                               TRT01A    Xanomeline High Dose                                 tabulate     p         %            0.283  28.3     <fn>    <NULL>  <NULL> stat_2    
  7 <NA>   <NULL>               <NA>     <NULL>                                               TRT01A    Xanomeline Low Dose                                  tabulate     n         n           96      96       0       <NULL>  <NULL> stat_3    
  8 <NA>   <NULL>               <NA>     <NULL>                                               TRT01A    Xanomeline Low Dose                                  tabulate     N         N          254      254      0       <NULL>  <NULL> stat_3    
  9 <NA>   <NULL>               <NA>     <NULL>                                               TRT01A    Xanomeline Low Dose                                  tabulate     p         %            0.378  37.8     <fn>    <NULL>  <NULL> stat_3    
 10 TRT01A Placebo              <NA>     <NULL>                                               AEBODSYS  GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS hierarchical n         n           21      21       <fn>    <NULL>  <NULL> stat_1    
 11 TRT01A Placebo              <NA>     <NULL>                                               AEBODSYS  GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 12 TRT01A Placebo              <NA>     <NULL>                                               AEBODSYS  GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS hierarchical p         %            0.244  24       <fn>    <NULL>  <NULL> stat_1    
 13 TRT01A Xanomeline High Dose <NA>     <NULL>                                               AEBODSYS  GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS hierarchical n         n           36      36       <fn>    <NULL>  <NULL> stat_2    
 14 TRT01A Xanomeline High Dose <NA>     <NULL>                                               AEBODSYS  GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 15 TRT01A Xanomeline High Dose <NA>     <NULL>                                               AEBODSYS  GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS hierarchical p         %            0.5    50       <fn>    <NULL>  <NULL> stat_2    
 16 TRT01A Xanomeline Low Dose  <NA>     <NULL>                                               AEBODSYS  GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS hierarchical n         n           51      51       <fn>    <NULL>  <NULL> stat_3    
 17 TRT01A Xanomeline Low Dose  <NA>     <NULL>                                               AEBODSYS  GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 18 TRT01A Xanomeline Low Dose  <NA>     <NULL>                                               AEBODSYS  GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS hierarchical p         %            0.531  53       <fn>    <NULL>  <NULL> stat_3    
 19 TRT01A Placebo              AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ1                                                hierarchical n         n            8      8        <fn>    <NULL>  <NULL> stat_1    
 20 TRT01A Placebo              AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ1                                                hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 21 TRT01A Placebo              AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ1                                                hierarchical p         %            0.0930 9.3      <fn>    <NULL>  <NULL> stat_1    
 22 TRT01A Xanomeline High Dose AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ1                                                hierarchical n         n           23      23       <fn>    <NULL>  <NULL> stat_2    
 23 TRT01A Xanomeline High Dose AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ1                                                hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 24 TRT01A Xanomeline High Dose AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ1                                                hierarchical p         %            0.319  32       <fn>    <NULL>  <NULL> stat_2    
 25 TRT01A Xanomeline Low Dose  AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ1                                                hierarchical n         n           25      25       <fn>    <NULL>  <NULL> stat_3    
 26 TRT01A Xanomeline Low Dose  AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ1                                                hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 27 TRT01A Xanomeline Low Dose  AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ1                                                hierarchical p         %            0.260  26       <fn>    <NULL>  <NULL> stat_3    
 28 TRT01A Placebo              AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ2                                                hierarchical n         n           11      11       <fn>    <NULL>  <NULL> stat_1    
 29 TRT01A Placebo              AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ2                                                hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 30 TRT01A Placebo              AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ2                                                hierarchical p         %            0.128  13       <fn>    <NULL>  <NULL> stat_1    
 31 TRT01A Xanomeline High Dose AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ2                                                hierarchical n         n           22      22       <fn>    <NULL>  <NULL> stat_2    
 32 TRT01A Xanomeline High Dose AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ2                                                hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 33 TRT01A Xanomeline High Dose AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ2                                                hierarchical p         %            0.306  31       <fn>    <NULL>  <NULL> stat_2    
 34 TRT01A Xanomeline Low Dose  AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ2                                                hierarchical n         n           26      26       <fn>    <NULL>  <NULL> stat_3    
 35 TRT01A Xanomeline Low Dose  AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ2                                                hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 36 TRT01A Xanomeline Low Dose  AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ2                                                hierarchical p         %            0.271  27       <fn>    <NULL>  <NULL> stat_3    
 37 TRT01A Placebo              AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ3                                                hierarchical n         n           14      14       <fn>    <NULL>  <NULL> stat_1    
 38 TRT01A Placebo              AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ3                                                hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 39 TRT01A Placebo              AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ3                                                hierarchical p         %            0.163  16       <fn>    <NULL>  <NULL> stat_1    
 40 TRT01A Xanomeline High Dose AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ3                                                hierarchical n         n           26      26       <fn>    <NULL>  <NULL> stat_2    
 41 TRT01A Xanomeline High Dose AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ3                                                hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 42 TRT01A Xanomeline High Dose AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ3                                                hierarchical p         %            0.361  36       <fn>    <NULL>  <NULL> stat_2    
 43 TRT01A Xanomeline Low Dose  AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ3                                                hierarchical n         n           32      32       <fn>    <NULL>  <NULL> stat_3    
 44 TRT01A Xanomeline Low Dose  AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ3                                                hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 45 TRT01A Xanomeline Low Dose  AEBODSYS GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS OCMQ01NAM OCMQ3                                                hierarchical p         %            0.333  33       <fn>    <NULL>  <NULL> stat_3    
 46 TRT01A Placebo              <NA>     <NULL>                                               AEBODSYS  NERVOUS SYSTEM DISORDERS                             hierarchical n         n           12      12       <fn>    <NULL>  <NULL> stat_1    
 47 TRT01A Placebo              <NA>     <NULL>                                               AEBODSYS  NERVOUS SYSTEM DISORDERS                             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 48 TRT01A Placebo              <NA>     <NULL>                                               AEBODSYS  NERVOUS SYSTEM DISORDERS                             hierarchical p         %            0.140  14       <fn>    <NULL>  <NULL> stat_1    
 49 TRT01A Xanomeline High Dose <NA>     <NULL>                                               AEBODSYS  NERVOUS SYSTEM DISORDERS                             hierarchical n         n           25      25       <fn>    <NULL>  <NULL> stat_2    
 50 TRT01A Xanomeline High Dose <NA>     <NULL>                                               AEBODSYS  NERVOUS SYSTEM DISORDERS                             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 51 TRT01A Xanomeline High Dose <NA>     <NULL>                                               AEBODSYS  NERVOUS SYSTEM DISORDERS                             hierarchical p         %            0.347  35       <fn>    <NULL>  <NULL> stat_2    
 52 TRT01A Xanomeline Low Dose  <NA>     <NULL>                                               AEBODSYS  NERVOUS SYSTEM DISORDERS                             hierarchical n         n           22      22       <fn>    <NULL>  <NULL> stat_3    
 53 TRT01A Xanomeline Low Dose  <NA>     <NULL>                                               AEBODSYS  NERVOUS SYSTEM DISORDERS                             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 54 TRT01A Xanomeline Low Dose  <NA>     <NULL>                                               AEBODSYS  NERVOUS SYSTEM DISORDERS                             hierarchical p         %            0.229  23       <fn>    <NULL>  <NULL> stat_3    
 55 TRT01A Placebo              AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ1                                                hierarchical n         n            3      3        <fn>    <NULL>  <NULL> stat_1    
 56 TRT01A Placebo              AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ1                                                hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 57 TRT01A Placebo              AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ1                                                hierarchical p         %            0.0349 3.5      <fn>    <NULL>  <NULL> stat_1    
 58 TRT01A Xanomeline High Dose AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ1                                                hierarchical n         n           10      10       <fn>    <NULL>  <NULL> stat_2    
 59 TRT01A Xanomeline High Dose AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ1                                                hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 60 TRT01A Xanomeline High Dose AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ1                                                hierarchical p         %            0.139  14       <fn>    <NULL>  <NULL> stat_2    
 61 TRT01A Xanomeline Low Dose  AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ1                                                hierarchical n         n           11      11       <fn>    <NULL>  <NULL> stat_3    
 62 TRT01A Xanomeline Low Dose  AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ1                                                hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 63 TRT01A Xanomeline Low Dose  AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ1                                                hierarchical p         %            0.115  11       <fn>    <NULL>  <NULL> stat_3    
 64 TRT01A Placebo              AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ2                                                hierarchical n         n            5      5        <fn>    <NULL>  <NULL> stat_1    
 65 TRT01A Placebo              AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ2                                                hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 66 TRT01A Placebo              AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ2                                                hierarchical p         %            0.0581 5.8      <fn>    <NULL>  <NULL> stat_1    
 67 TRT01A Xanomeline High Dose AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ2                                                hierarchical n         n           12      12       <fn>    <NULL>  <NULL> stat_2    
 68 TRT01A Xanomeline High Dose AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ2                                                hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 69 TRT01A Xanomeline High Dose AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ2                                                hierarchical p         %            0.167  17       <fn>    <NULL>  <NULL> stat_2    
 70 TRT01A Xanomeline Low Dose  AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ2                                                hierarchical n         n           13      13       <fn>    <NULL>  <NULL> stat_3    
 71 TRT01A Xanomeline Low Dose  AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ2                                                hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 72 TRT01A Xanomeline Low Dose  AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ2                                                hierarchical p         %            0.135  14       <fn>    <NULL>  <NULL> stat_3    
 73 TRT01A Placebo              AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ3                                                hierarchical n         n            7      7        <fn>    <NULL>  <NULL> stat_1    
 74 TRT01A Placebo              AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ3                                                hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 75 TRT01A Placebo              AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ3                                                hierarchical p         %            0.0814 8.1      <fn>    <NULL>  <NULL> stat_1    
 76 TRT01A Xanomeline High Dose AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ3                                                hierarchical n         n           15      15       <fn>    <NULL>  <NULL> stat_2    
 77 TRT01A Xanomeline High Dose AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ3                                                hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 78 TRT01A Xanomeline High Dose AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ3                                                hierarchical p         %            0.208  21       <fn>    <NULL>  <NULL> stat_2    
 79 TRT01A Xanomeline Low Dose  AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ3                                                hierarchical n         n            8      8        <fn>    <NULL>  <NULL> stat_3    
 80 TRT01A Xanomeline Low Dose  AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ3                                                hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 81 TRT01A Xanomeline Low Dose  AEBODSYS NERVOUS SYSTEM DISORDERS                             OCMQ01NAM OCMQ3                                                hierarchical p         %            0.0833 8.3      <fn>    <NULL>  <NULL> stat_3    
 82 TRT01A Placebo              <NA>     <NULL>                                               AEBODSYS  SKIN AND SUBCUTANEOUS TISSUE DISORDERS               hierarchical n         n           21      21       <fn>    <NULL>  <NULL> stat_1    
 83 TRT01A Placebo              <NA>     <NULL>                                               AEBODSYS  SKIN AND SUBCUTANEOUS TISSUE DISORDERS               hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 84 TRT01A Placebo              <NA>     <NULL>                                               AEBODSYS  SKIN AND SUBCUTANEOUS TISSUE DISORDERS               hierarchical p         %            0.244  24       <fn>    <NULL>  <NULL> stat_1    
 85 TRT01A Xanomeline High Dose <NA>     <NULL>                                               AEBODSYS  SKIN AND SUBCUTANEOUS TISSUE DISORDERS               hierarchical n         n           42      42       <fn>    <NULL>  <NULL> stat_2    
 86 TRT01A Xanomeline High Dose <NA>     <NULL>                                               AEBODSYS  SKIN AND SUBCUTANEOUS TISSUE DISORDERS               hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 87 TRT01A Xanomeline High Dose <NA>     <NULL>                                               AEBODSYS  SKIN AND SUBCUTANEOUS TISSUE DISORDERS               hierarchical p         %            0.583  58       <fn>    <NULL>  <NULL> stat_2    
 88 TRT01A Xanomeline Low Dose  <NA>     <NULL>                                               AEBODSYS  SKIN AND SUBCUTANEOUS TISSUE DISORDERS               hierarchical n         n           42      42       <fn>    <NULL>  <NULL> stat_3    
 89 TRT01A Xanomeline Low Dose  <NA>     <NULL>                                               AEBODSYS  SKIN AND SUBCUTANEOUS TISSUE DISORDERS               hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 90 TRT01A Xanomeline Low Dose  <NA>     <NULL>                                               AEBODSYS  SKIN AND SUBCUTANEOUS TISSUE DISORDERS               hierarchical p         %            0.438  44       <fn>    <NULL>  <NULL> stat_3    
 91 TRT01A Placebo              AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ1                                                hierarchical n         n           11      11       <fn>    <NULL>  <NULL> stat_1    
 92 TRT01A Placebo              AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ1                                                hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
 93 TRT01A Placebo              AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ1                                                hierarchical p         %            0.128  13       <fn>    <NULL>  <NULL> stat_1    
 94 TRT01A Xanomeline High Dose AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ1                                                hierarchical n         n           18      18       <fn>    <NULL>  <NULL> stat_2    
 95 TRT01A Xanomeline High Dose AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ1                                                hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
 96 TRT01A Xanomeline High Dose AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ1                                                hierarchical p         %            0.25   25       <fn>    <NULL>  <NULL> stat_2    
 97 TRT01A Xanomeline Low Dose  AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ1                                                hierarchical n         n           28      28       <fn>    <NULL>  <NULL> stat_3    
 98 TRT01A Xanomeline Low Dose  AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ1                                                hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
 99 TRT01A Xanomeline Low Dose  AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ1                                                hierarchical p         %            0.292  29       <fn>    <NULL>  <NULL> stat_3    
100 TRT01A Placebo              AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ2                                                hierarchical n         n           14      14       <fn>    <NULL>  <NULL> stat_1    
101 TRT01A Placebo              AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ2                                                hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
102 TRT01A Placebo              AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ2                                                hierarchical p         %            0.163  16       <fn>    <NULL>  <NULL> stat_1    
103 TRT01A Xanomeline High Dose AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ2                                                hierarchical n         n           27      27       <fn>    <NULL>  <NULL> stat_2    
104 TRT01A Xanomeline High Dose AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ2                                                hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
105 TRT01A Xanomeline High Dose AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ2                                                hierarchical p         %            0.375  38       <fn>    <NULL>  <NULL> stat_2    
106 TRT01A Xanomeline Low Dose  AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ2                                                hierarchical n         n           25      25       <fn>    <NULL>  <NULL> stat_3    
107 TRT01A Xanomeline Low Dose  AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ2                                                hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
108 TRT01A Xanomeline Low Dose  AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ2                                                hierarchical p         %            0.260  26       <fn>    <NULL>  <NULL> stat_3    
109 TRT01A Placebo              AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ3                                                hierarchical n         n           11      11       <fn>    <NULL>  <NULL> stat_1    
110 TRT01A Placebo              AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ3                                                hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
111 TRT01A Placebo              AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ3                                                hierarchical p         %            0.128  13       <fn>    <NULL>  <NULL> stat_1    
112 TRT01A Xanomeline High Dose AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ3                                                hierarchical n         n           25      25       <fn>    <NULL>  <NULL> stat_2    
113 TRT01A Xanomeline High Dose AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ3                                                hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
114 TRT01A Xanomeline High Dose AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ3                                                hierarchical p         %            0.347  35       <fn>    <NULL>  <NULL> stat_2    
115 TRT01A Xanomeline Low Dose  AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ3                                                hierarchical n         n           23      23       <fn>    <NULL>  <NULL> stat_3    
116 TRT01A Xanomeline Low Dose  AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ3                                                hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
117 TRT01A Xanomeline Low Dose  AEBODSYS SKIN AND SUBCUTANEOUS TISSUE DISORDERS               OCMQ01NAM OCMQ3                                                hierarchical p         %            0.240  24       <fn>    <NULL>  <NULL> stat_3    
Source Code
---
title: Subjects With Adverse Events Leading to Treatment Discontinuation by Organ System and OCMQ (Narrow), Safety Population, Pooled Analysis (or Trial X)
subtitle: FDA Table 13
categories: [table, FDA, safety, adverse events]
---

::::: columns

:::: {.column width="52%"}
### FDA IG Shell

![](ig_shell.png){fig-alt="FDA IG example table shell" .lightbox width=100%}

### Programming Notes

**Background and Instructions**

Refer to Table 30: Subjects With Adverse Events Leading to Discontinuation for AEs leading to treatment discontinuation by organ system, OCMQs (narrow), and the specific preferred terms for these OCMQs.

**Customization**

Clinical reviewers may request a similar table of OCMQs (broad) leading to treatment discontinuation. Clinical reviewers may also request tables from Section 4.1 Optional Adverse Event Analyses to explore the data on specific subjects.

::::

:::: {.column width="4%"}
::::

:::: {.column width="44%"}
### Output

```{r out-result, echo=FALSE, fig.align='center', out.width='100%'}
knitr::include_graphics("result.png")
```

::::

:::::

::: panel-tabset
## Full Code

```{r fullcode, file="../../../inst/templates/fda-table_13.R", message=FALSE, warning=FALSE, results='hide'}
```

## Table

```{r tbl}
tbl
```

## ARD

```{r ard, message=FALSE, warning=FALSE}
withr::local_options(width = 9999, tibble.print_max = Inf)
print(ard, columns = "all")
```

:::
 
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