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Subjects With Adverse Events by Organ System and OCMQ, Safety Population, Pooled Analysis (or Trial X)

FDA Table 17

table
FDA
safety
adverse events

FDA IG Shell

FDA IG example table shell

Programming Notes

Background and Instructions

For Table 17: Subjects With Adverse Events by Organ System, it is important to review the entire table (or spreadsheet) produced by the CDS before deciding on the appropriate cutoff to be presented in the review. Depending on the data presented, a >5%, >2%, or >1% frequency or none may be an appropriate cutoff. Refer to Table 31 Subjects With Adverse Events by Organ System, OCMQ (Narrow) and Preferred Term, Safety Population, Pooled Analysis (or Trial X) to view specific preferred terms under each narrow OCMQ by organ system.

Customization

After analyzing, clinical reviewers may request to view specific preferred terms under each broad OCMQ by organ system. Based on the assessment of the OCMQ results, clinical reviewers may request Table 41: Subjects With Select Narrow FDA Medical Queries and Table 42: Subjects With Select Broad FDA Medical Queries found in Section 4.1 Optional Adverse Event Analyses to explore the data on specific subjects.

Output

  • Full Code
  • Table
  • ARD
Code
# FDA TABLE 17 ---------------------------------------------------------------
# Self-contained template. Run top-to-bottom to build the objects below.
# Used by tests via run_template() and published in the catalog.

library(dplyr)
library(cards)
library(gtsummary)

adae <- pharmaverseadam::adae |>
  rename(OCMQ01SC = AEHLTCD, OCMQ01NAM = AEHLT)

adsl <- pharmaverseadam::adsl

set.seed(23)
adae$OCMQ01SC <- sample(c("BROAD", "NARROW"), size = nrow(adae), replace = TRUE)

# Pre-processing --------------------------------------------
adae <- adae |>
  # safety population
  filter(SAFFL == "Y") |>
  # filter 0CMQ to truncate table
  filter(
    OCMQ01NAM %in%
      c("HLT_0649", "HLT_0644", " HLT_0570", " HLT_0256", "HLT_0742", "HLT_0244", "HLT_0097", "HLT_0738")
  )

adsl <- adsl |>
  # safety population
  filter(SAFFL == "Y")

tbl <- adae |>
  select(OCMQ01SC, TRT01A, OCMQ01NAM, AEBODSYS, USUBJID) |>
  # setting an explicit level for NA values so empty strata combinations are shown.
  mutate(across(everything(), ~ {
    if (anyNA(.)) {
      forcats::fct_na_value_to_level(as.factor(.), level = "<Missing>")
    } else {
      .
    }
  })) |>
  tbl_strata(
    strata = OCMQ01SC,
    ~ tbl_hierarchical(
      .x,
      by = TRT01A,
      variables = c(AEBODSYS, OCMQ01NAM),
      id = USUBJID,
      denominator = adsl,
      # variables to calculate rates for
      include = c(OCMQ01NAM),
      label = list(OCMQ01NAM ~ "OCMQ", AEBODSYS ~ "System Organ Class")
    )
  ) |>
  modify_missing_symbol("NA", columns = everything(), rows = row_type == "level")


ard <- gtsummary::gather_ard(tbl)
Code
tbl
System Organ Class
    OCMQ
BROAD
NARROW
Placebo
N = 861
Xanomeline High Dose
N = 721
Xanomeline Low Dose
N = 961
Placebo
N = 861
Xanomeline High Dose
N = 721
Xanomeline Low Dose
N = 961
CARDIAC DISORDERS





    HLT_0644 0 (0%) 7 (9.7%) 6 (6.3%) 2 (2.3%) 4 (5.6%) 3 (3.1%)
    HLT_0649 2 (2.3%) 1 (1.4%) 2 (2.1%) 2 (2.3%) 3 (4.2%) 1 (1.0%)
GASTROINTESTINAL DISORDERS





    HLT_0244 1 (1.2%) 0 (0%) 1 (1.0%) 1 (1.2%) 1 (1.4%) 1 (1.0%)
    HLT_0742 2 (2.3%) 3 (4.2%) 2 (2.1%) 1 (1.2%) 5 (6.9%) 3 (3.1%)
INJURY, POISONING AND PROCEDURAL COMPLICATIONS





    HLT_0097 1 (1.2%) 1 (1.4%) 0 (0%) 1 (1.2%) 1 (1.4%) 0 (0%)
    HLT_0738 2 (2.3%) 0 (0%) 1 (1.0%) 1 (1.2%) 1 (1.4%) 1 (1.0%)
1 n (%)
Code
withr::local_options(width = 9999, tibble.print_max = Inf)
print(ard, columns = "all")
$`OCMQ01SC="BROAD"`
$`OCMQ01SC="BROAD"`$tbl_hierarchical
# An ARD data frame: 63 × 15
   group1 group1_level         group2   group2_level                                   variable  variable_level       context      stat_name stat_label     stat stat_fmt fmt_fun warning error  gts_column
   <chr>  <list>               <chr>    <list>                                         <chr>     <list>               <chr>        <chr>     <chr>        <list> <list>   <list>  <list>  <list> <chr>     
 1 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Placebo              tabulate     n         n           86      86       0       <NULL>  <NULL> stat_1    
 2 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Placebo              tabulate     N         N          254      254      0       <NULL>  <NULL> stat_1    
 3 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Placebo              tabulate     p         %            0.339  33.9     <fn>    <NULL>  <NULL> stat_1    
 4 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline High Dose tabulate     n         n           72      72       0       <NULL>  <NULL> stat_2    
 5 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline High Dose tabulate     N         N          254      254      0       <NULL>  <NULL> stat_2    
 6 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline High Dose tabulate     p         %            0.283  28.3     <fn>    <NULL>  <NULL> stat_2    
 7 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline Low Dose  tabulate     n         n           96      96       0       <NULL>  <NULL> stat_3    
 8 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline Low Dose  tabulate     N         N          254      254      0       <NULL>  <NULL> stat_3    
 9 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline Low Dose  tabulate     p         %            0.378  37.8     <fn>    <NULL>  <NULL> stat_3    
10 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical n         n            0      0        <fn>    <NULL>  <NULL> stat_1    
11 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
12 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical p         %            0      0        <fn>    <NULL>  <NULL> stat_1    
13 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical n         n            7      7        <fn>    <NULL>  <NULL> stat_2    
14 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
15 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical p         %            0.0972 9.7      <fn>    <NULL>  <NULL> stat_2    
16 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical n         n            6      6        <fn>    <NULL>  <NULL> stat_3    
17 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
18 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical p         %            0.0625 6.3      <fn>    <NULL>  <NULL> stat_3    
19 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical n         n            2      2        <fn>    <NULL>  <NULL> stat_1    
20 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
21 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical p         %            0.0233 2.3      <fn>    <NULL>  <NULL> stat_1    
22 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_2    
23 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
24 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
25 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical n         n            2      2        <fn>    <NULL>  <NULL> stat_3    
26 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
27 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical p         %            0.0208 2.1      <fn>    <NULL>  <NULL> stat_3    
28 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_1    
29 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
30 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
31 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical n         n            0      0        <fn>    <NULL>  <NULL> stat_2    
32 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
33 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical p         %            0      0        <fn>    <NULL>  <NULL> stat_2    
34 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_3    
35 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
36 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical p         %            0.0104 1.0      <fn>    <NULL>  <NULL> stat_3    
37 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical n         n            2      2        <fn>    <NULL>  <NULL> stat_1    
38 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
39 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical p         %            0.0233 2.3      <fn>    <NULL>  <NULL> stat_1    
40 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical n         n            3      3        <fn>    <NULL>  <NULL> stat_2    
41 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
42 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical p         %            0.0417 4.2      <fn>    <NULL>  <NULL> stat_2    
43 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical n         n            2      2        <fn>    <NULL>  <NULL> stat_3    
44 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
45 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical p         %            0.0208 2.1      <fn>    <NULL>  <NULL> stat_3    
46 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_1    
47 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
48 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
49 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_2    
50 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
51 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
52 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical n         n            0      0        <fn>    <NULL>  <NULL> stat_3    
53 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
54 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical p         %            0      0        <fn>    <NULL>  <NULL> stat_3    
55 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical n         n            2      2        <fn>    <NULL>  <NULL> stat_1    
56 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
57 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical p         %            0.0233 2.3      <fn>    <NULL>  <NULL> stat_1    
58 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical n         n            0      0        <fn>    <NULL>  <NULL> stat_2    
59 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
60 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical p         %            0      0        <fn>    <NULL>  <NULL> stat_2    
61 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_3    
62 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
63 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical p         %            0.0104 1.0      <fn>    <NULL>  <NULL> stat_3    


$`OCMQ01SC="NARROW"`
$`OCMQ01SC="NARROW"`$tbl_hierarchical
# An ARD data frame: 63 × 15
   group1 group1_level         group2   group2_level                                   variable  variable_level       context      stat_name stat_label     stat stat_fmt fmt_fun warning error  gts_column
   <chr>  <list>               <chr>    <list>                                         <chr>     <list>               <chr>        <chr>     <chr>        <list> <list>   <list>  <list>  <list> <chr>     
 1 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Placebo              tabulate     n         n           86      86       0       <NULL>  <NULL> stat_1    
 2 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Placebo              tabulate     N         N          254      254      0       <NULL>  <NULL> stat_1    
 3 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Placebo              tabulate     p         %            0.339  33.9     <fn>    <NULL>  <NULL> stat_1    
 4 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline High Dose tabulate     n         n           72      72       0       <NULL>  <NULL> stat_2    
 5 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline High Dose tabulate     N         N          254      254      0       <NULL>  <NULL> stat_2    
 6 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline High Dose tabulate     p         %            0.283  28.3     <fn>    <NULL>  <NULL> stat_2    
 7 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline Low Dose  tabulate     n         n           96      96       0       <NULL>  <NULL> stat_3    
 8 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline Low Dose  tabulate     N         N          254      254      0       <NULL>  <NULL> stat_3    
 9 <NA>   <NULL>               <NA>     <NULL>                                         TRT01A    Xanomeline Low Dose  tabulate     p         %            0.378  37.8     <fn>    <NULL>  <NULL> stat_3    
10 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical n         n            2      2        <fn>    <NULL>  <NULL> stat_1    
11 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
12 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical p         %            0.0233 2.3      <fn>    <NULL>  <NULL> stat_1    
13 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical n         n            4      4        <fn>    <NULL>  <NULL> stat_2    
14 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
15 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical p         %            0.0556 5.6      <fn>    <NULL>  <NULL> stat_2    
16 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical n         n            3      3        <fn>    <NULL>  <NULL> stat_3    
17 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
18 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0644             hierarchical p         %            0.0312 3.1      <fn>    <NULL>  <NULL> stat_3    
19 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical n         n            2      2        <fn>    <NULL>  <NULL> stat_1    
20 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
21 TRT01A Placebo              AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical p         %            0.0233 2.3      <fn>    <NULL>  <NULL> stat_1    
22 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical n         n            3      3        <fn>    <NULL>  <NULL> stat_2    
23 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
24 TRT01A Xanomeline High Dose AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical p         %            0.0417 4.2      <fn>    <NULL>  <NULL> stat_2    
25 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_3    
26 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
27 TRT01A Xanomeline Low Dose  AEBODSYS CARDIAC DISORDERS                              OCMQ01NAM HLT_0649             hierarchical p         %            0.0104 1.0      <fn>    <NULL>  <NULL> stat_3    
28 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_1    
29 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
30 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
31 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_2    
32 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
33 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
34 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_3    
35 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
36 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0244             hierarchical p         %            0.0104 1.0      <fn>    <NULL>  <NULL> stat_3    
37 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_1    
38 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
39 TRT01A Placebo              AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
40 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical n         n            5      5        <fn>    <NULL>  <NULL> stat_2    
41 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
42 TRT01A Xanomeline High Dose AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical p         %            0.0694 6.9      <fn>    <NULL>  <NULL> stat_2    
43 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical n         n            3      3        <fn>    <NULL>  <NULL> stat_3    
44 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
45 TRT01A Xanomeline Low Dose  AEBODSYS GASTROINTESTINAL DISORDERS                     OCMQ01NAM HLT_0742             hierarchical p         %            0.0312 3.1      <fn>    <NULL>  <NULL> stat_3    
46 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_1    
47 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
48 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
49 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_2    
50 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
51 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
52 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical n         n            0      0        <fn>    <NULL>  <NULL> stat_3    
53 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
54 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0097             hierarchical p         %            0      0        <fn>    <NULL>  <NULL> stat_3    
55 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_1    
56 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical N         N           86      86       <fn>    <NULL>  <NULL> stat_1    
57 TRT01A Placebo              AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
58 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_2    
59 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical N         N           72      72       <fn>    <NULL>  <NULL> stat_2    
60 TRT01A Xanomeline High Dose AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
61 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical n         n            1      1        <fn>    <NULL>  <NULL> stat_3    
62 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical N         N           96      96       <fn>    <NULL>  <NULL> stat_3    
63 TRT01A Xanomeline Low Dose  AEBODSYS INJURY, POISONING AND PROCEDURAL COMPLICATIONS OCMQ01NAM HLT_0738             hierarchical p         %            0.0104 1.0      <fn>    <NULL>  <NULL> stat_3    
Source Code
---
title: Subjects With Adverse Events by Organ System and OCMQ, Safety Population, Pooled Analysis (or Trial X) 
subtitle: FDA Table 17
categories: [table, FDA, safety, adverse events]
---

::::: columns

:::: {.column width="52%"}
### FDA IG Shell

![](ig_shell.png){fig-alt="FDA IG example table shell" .lightbox width=100%}

### Programming Notes

**Background and Instructions**

For Table 17: Subjects With Adverse Events by Organ System, it is important to review the entire table (or spreadsheet) produced by the CDS before deciding on the appropriate cutoff to be presented in the review. Depending on the data presented, a >5%, >2%, or >1% frequency or none may be an appropriate cutoff. Refer to Table 31 Subjects With Adverse Events by Organ System, OCMQ (Narrow) and Preferred Term, Safety Population, Pooled Analysis (or Trial X) to view specific preferred terms under each narrow OCMQ by organ system.

**Customization**

After analyzing, clinical reviewers may request to view specific preferred terms under each broad OCMQ by organ system. Based on the assessment of the OCMQ results, clinical reviewers may request Table 41: Subjects With Select Narrow FDA Medical Queries and Table 42: Subjects With Select Broad FDA Medical Queries found in Section 4.1 Optional Adverse Event Analyses to explore the data on specific subjects.

::::

:::: {.column width="4%"}
::::

:::: {.column width="44%"}
### Output

```{r out-result, echo=FALSE, fig.align='center', out.width='100%'}
knitr::include_graphics("result.png")
```

::::

:::::

::: panel-tabset
## Full Code

```{r fullcode, file="../../../inst/templates/fda-table_17.R", message=FALSE, warning=FALSE, results='hide'}
```

## Table

```{r tbl}
tbl
```

## ARD

```{r ard, message=FALSE, warning=FALSE}
withr::local_options(width = 9999, tibble.print_max = Inf)
print(ard, columns = "all")
```

:::
 
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