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Subjects With Adverse Events by Organ System, OCMQ (Broad) and Preferred Term, Safety Population, Pooled Analysis (or Trial X)

FDA Table 43

table
FDA
safety
adverse events

FDA IG Shell

FDA IG example table shell

Programming Notes

Background and Instructions

N/A (per FDA IG)

Customization

N/A (per FDA IG)

Output

  • Full Code
  • Table
  • ARD
Code
# FDA TABLE 43 ---------------------------------------------------------------
# Self-contained template. Run top-to-bottom to build the objects below.
# Used by tests via run_template() and published in the catalog.

library(dplyr)
library(cards)
library(gtsummary)

adae <- pharmaverseadam::adae
adsl <- pharmaverseadam::adsl

set.seed(1)
adae <- adae |>
  mutate(
    AESER = sample(c("Y", "N"), size = nrow(adae), replace = TRUE),
    OCMQ01NAM = sample(c("OCMQ1", "OCMQ2", "OCMQ3"), size = nrow(adae), replace = TRUE),
    OCMQ01SC = sample(c("BROAD", "NARROW"), size = nrow(adae), replace = TRUE)
  )

# Pre-processing --------------------------------------------
adsl <- adsl |>
  filter(SAFFL == "Y") # safety population

data <- adae |>
  filter(
    # safety population
    SAFFL == "Y",
    # treatment-emergent
    TRTEMFL == "Y",
    # broad OCMQ scope
    OCMQ01SC == "BROAD",
    # filtering here to reduce the size of the table
    AESOC %in% c("EYE DISORDERS", "EAR AND LABYRINTH DISORDERS", "CONGENITAL, FAMILIAL AND GENETIC DISORDERS")
  )

ard <- ard_stack_hierarchical(
  data,
  variables = c(AEBODSYS, OCMQ01NAM, AEDECOD),
  by = TRT01A,
  id = USUBJID,
  denominator = adsl,
  # variables to include AE rates for
  include = c(OCMQ01NAM, AEDECOD)
)

# create table using ARD-first approach (ARD -> table)
tbl <-
  tbl_ard_hierarchical(
    ard,
    variables = c(AEBODSYS, OCMQ01NAM, AEDECOD),
    by = TRT01A,
    # variables to display AE rates for
    include = c(OCMQ01NAM, AEDECOD),
    # Add custom variable labels
    label = list(
      AEBODSYS = "Organ System",
      OCMQ01NAM = "OCMQ (Broad)",
      AEDECOD = "Preferred Term"
    )
  )


ard <- gtsummary::gather_ard(tbl)
Code
tbl
Organ System
    OCMQ (Broad)
        Preferred Term
Placebo
N = 861
Xanomeline High Dose
N = 721
Xanomeline Low Dose
N = 961
CONGENITAL, FAMILIAL AND GENETIC DISORDERS


    OCMQ3 0 (0.0%) 1 (1.4%) 0 (0.0%)
        VENTRICULAR SEPTAL DEFECT 0 (0.0%) 1 (1.4%) 0 (0.0%)
EAR AND LABYRINTH DISORDERS


    OCMQ1 1 (1.2%) 1 (1.4%) 0 (0.0%)
        EAR PAIN 1 (1.2%) 0 (0.0%) 0 (0.0%)
        VERTIGO 0 (0.0%) 1 (1.4%) 0 (0.0%)
    OCMQ2 0 (0.0%) 0 (0.0%) 1 (1.0%)
        CERUMEN IMPACTION 0 (0.0%) 0 (0.0%) 1 (1.0%)
EYE DISORDERS


    OCMQ1 2 (2.3%) 0 (0.0%) 0 (0.0%)
        CONJUNCTIVITIS 1 (1.2%) 0 (0.0%) 0 (0.0%)
        EYE ALLERGY 1 (1.2%) 0 (0.0%) 0 (0.0%)
        EYE PRURITUS 1 (1.2%) 0 (0.0%) 0 (0.0%)
    OCMQ2 1 (1.2%) 0 (0.0%) 0 (0.0%)
        CONJUNCTIVITIS 1 (1.2%) 0 (0.0%) 0 (0.0%)
    OCMQ3 0 (0.0%) 1 (1.4%) 1 (1.0%)
        VISION BLURRED 0 (0.0%) 1 (1.4%) 1 (1.0%)
1 n (%)
Code
withr::local_options(width = 9999, tibble.print_max = Inf)
print(ard, columns = "all")
$tbl_ard_hierarchical
# An ARD data frame: 144 × 17
    group1 group1_level         group2   group2_level                               group3    group3_level variable  variable_level            context      stat_name stat_label     stat stat_fmt fmt_fun warning error  gts_column
    <chr>  <list>               <chr>    <list>                                     <chr>     <list>       <chr>     <list>                    <chr>        <chr>     <chr>        <list> <list>   <list>  <list>  <list> <chr>     
  1 <NA>   <NULL>               <NA>     <NULL>                                     <NA>      <NULL>       TRT01A    Placebo                   tabulate     n         n           86      86       0       <NULL>  <NULL> stat_1    
  2 <NA>   <NULL>               <NA>     <NULL>                                     <NA>      <NULL>       TRT01A    Placebo                   tabulate     N         N          254      254      0       <NULL>  <NULL> stat_1    
  3 <NA>   <NULL>               <NA>     <NULL>                                     <NA>      <NULL>       TRT01A    Placebo                   tabulate     p         %            0.339  33.9     <fn>    <NULL>  <NULL> stat_1    
  4 <NA>   <NULL>               <NA>     <NULL>                                     <NA>      <NULL>       TRT01A    Xanomeline High Dose      tabulate     n         n           72      72       0       <NULL>  <NULL> stat_2    
  5 <NA>   <NULL>               <NA>     <NULL>                                     <NA>      <NULL>       TRT01A    Xanomeline High Dose      tabulate     N         N          254      254      0       <NULL>  <NULL> stat_2    
  6 <NA>   <NULL>               <NA>     <NULL>                                     <NA>      <NULL>       TRT01A    Xanomeline High Dose      tabulate     p         %            0.283  28.3     <fn>    <NULL>  <NULL> stat_2    
  7 <NA>   <NULL>               <NA>     <NULL>                                     <NA>      <NULL>       TRT01A    Xanomeline Low Dose       tabulate     n         n           96      96       0       <NULL>  <NULL> stat_3    
  8 <NA>   <NULL>               <NA>     <NULL>                                     <NA>      <NULL>       TRT01A    Xanomeline Low Dose       tabulate     N         N          254      254      0       <NULL>  <NULL> stat_3    
  9 <NA>   <NULL>               <NA>     <NULL>                                     <NA>      <NULL>       TRT01A    Xanomeline Low Dose       tabulate     p         %            0.378  37.8     <fn>    <NULL>  <NULL> stat_3    
 10 TRT01A Placebo              AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_1    
 11 TRT01A Placebo              AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 12 TRT01A Placebo              AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_1    
 13 TRT01A Xanomeline High Dose AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical n         n            1      1        0       <NULL>  <NULL> stat_2    
 14 TRT01A Xanomeline High Dose AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 15 TRT01A Xanomeline High Dose AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
 16 TRT01A Xanomeline Low Dose  AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
 17 TRT01A Xanomeline Low Dose  AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 18 TRT01A Xanomeline Low Dose  AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
 19 TRT01A Placebo              AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS OCMQ01NAM OCMQ3        AEDECOD   VENTRICULAR SEPTAL DEFECT hierarchical n         n            0      0        0       <NULL>  <NULL> stat_1    
 20 TRT01A Placebo              AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS OCMQ01NAM OCMQ3        AEDECOD   VENTRICULAR SEPTAL DEFECT hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 21 TRT01A Placebo              AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS OCMQ01NAM OCMQ3        AEDECOD   VENTRICULAR SEPTAL DEFECT hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_1    
 22 TRT01A Xanomeline High Dose AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS OCMQ01NAM OCMQ3        AEDECOD   VENTRICULAR SEPTAL DEFECT hierarchical n         n            1      1        0       <NULL>  <NULL> stat_2    
 23 TRT01A Xanomeline High Dose AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS OCMQ01NAM OCMQ3        AEDECOD   VENTRICULAR SEPTAL DEFECT hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 24 TRT01A Xanomeline High Dose AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS OCMQ01NAM OCMQ3        AEDECOD   VENTRICULAR SEPTAL DEFECT hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
 25 TRT01A Xanomeline Low Dose  AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS OCMQ01NAM OCMQ3        AEDECOD   VENTRICULAR SEPTAL DEFECT hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
 26 TRT01A Xanomeline Low Dose  AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS OCMQ01NAM OCMQ3        AEDECOD   VENTRICULAR SEPTAL DEFECT hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 27 TRT01A Xanomeline Low Dose  AEBODSYS CONGENITAL, FAMILIAL AND GENETIC DISORDERS OCMQ01NAM OCMQ3        AEDECOD   VENTRICULAR SEPTAL DEFECT hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
 28 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical n         n            1      1        0       <NULL>  <NULL> stat_1    
 29 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 30 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
 31 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical n         n            1      1        0       <NULL>  <NULL> stat_2    
 32 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 33 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
 34 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
 35 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 36 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
 37 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   EAR PAIN                  hierarchical n         n            1      1        0       <NULL>  <NULL> stat_1    
 38 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   EAR PAIN                  hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 39 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   EAR PAIN                  hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
 40 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   EAR PAIN                  hierarchical n         n            0      0        0       <NULL>  <NULL> stat_2    
 41 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   EAR PAIN                  hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 42 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   EAR PAIN                  hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_2    
 43 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   EAR PAIN                  hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
 44 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   EAR PAIN                  hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 45 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   EAR PAIN                  hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
 46 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   VERTIGO                   hierarchical n         n            0      0        0       <NULL>  <NULL> stat_1    
 47 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   VERTIGO                   hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 48 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   VERTIGO                   hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_1    
 49 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   VERTIGO                   hierarchical n         n            1      1        0       <NULL>  <NULL> stat_2    
 50 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   VERTIGO                   hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 51 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   VERTIGO                   hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
 52 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   VERTIGO                   hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
 53 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   VERTIGO                   hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 54 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ1        AEDECOD   VERTIGO                   hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
 55 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_1    
 56 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 57 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_1    
 58 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_2    
 59 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 60 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_2    
 61 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical n         n            1      1        0       <NULL>  <NULL> stat_3    
 62 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 63 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical p         %            0.0104 1.0      <fn>    <NULL>  <NULL> stat_3    
 64 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ2        AEDECOD   CERUMEN IMPACTION         hierarchical n         n            0      0        0       <NULL>  <NULL> stat_1    
 65 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ2        AEDECOD   CERUMEN IMPACTION         hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 66 TRT01A Placebo              AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ2        AEDECOD   CERUMEN IMPACTION         hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_1    
 67 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ2        AEDECOD   CERUMEN IMPACTION         hierarchical n         n            0      0        0       <NULL>  <NULL> stat_2    
 68 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ2        AEDECOD   CERUMEN IMPACTION         hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 69 TRT01A Xanomeline High Dose AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ2        AEDECOD   CERUMEN IMPACTION         hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_2    
 70 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ2        AEDECOD   CERUMEN IMPACTION         hierarchical n         n            1      1        0       <NULL>  <NULL> stat_3    
 71 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ2        AEDECOD   CERUMEN IMPACTION         hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 72 TRT01A Xanomeline Low Dose  AEBODSYS EAR AND LABYRINTH DISORDERS                OCMQ01NAM OCMQ2        AEDECOD   CERUMEN IMPACTION         hierarchical p         %            0.0104 1.0      <fn>    <NULL>  <NULL> stat_3    
 73 TRT01A Placebo              AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical n         n            2      2        0       <NULL>  <NULL> stat_1    
 74 TRT01A Placebo              AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 75 TRT01A Placebo              AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical p         %            0.0233 2.3      <fn>    <NULL>  <NULL> stat_1    
 76 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_2    
 77 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 78 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_2    
 79 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
 80 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 81 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ1                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
 82 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   CONJUNCTIVITIS            hierarchical n         n            1      1        0       <NULL>  <NULL> stat_1    
 83 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   CONJUNCTIVITIS            hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 84 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   CONJUNCTIVITIS            hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
 85 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   CONJUNCTIVITIS            hierarchical n         n            0      0        0       <NULL>  <NULL> stat_2    
 86 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   CONJUNCTIVITIS            hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 87 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   CONJUNCTIVITIS            hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_2    
 88 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   CONJUNCTIVITIS            hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
 89 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   CONJUNCTIVITIS            hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 90 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   CONJUNCTIVITIS            hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
 91 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE ALLERGY               hierarchical n         n            1      1        0       <NULL>  <NULL> stat_1    
 92 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE ALLERGY               hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
 93 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE ALLERGY               hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
 94 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE ALLERGY               hierarchical n         n            0      0        0       <NULL>  <NULL> stat_2    
 95 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE ALLERGY               hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
 96 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE ALLERGY               hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_2    
 97 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE ALLERGY               hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
 98 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE ALLERGY               hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
 99 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE ALLERGY               hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
100 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE PRURITUS              hierarchical n         n            1      1        0       <NULL>  <NULL> stat_1    
101 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE PRURITUS              hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
102 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE PRURITUS              hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
103 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE PRURITUS              hierarchical n         n            0      0        0       <NULL>  <NULL> stat_2    
104 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE PRURITUS              hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
105 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE PRURITUS              hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_2    
106 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE PRURITUS              hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
107 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE PRURITUS              hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
108 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ1        AEDECOD   EYE PRURITUS              hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
109 TRT01A Placebo              AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical n         n            1      1        0       <NULL>  <NULL> stat_1    
110 TRT01A Placebo              AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
111 TRT01A Placebo              AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
112 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_2    
113 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
114 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_2    
115 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
116 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
117 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ2                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
118 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ2        AEDECOD   CONJUNCTIVITIS            hierarchical n         n            1      1        0       <NULL>  <NULL> stat_1    
119 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ2        AEDECOD   CONJUNCTIVITIS            hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
120 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ2        AEDECOD   CONJUNCTIVITIS            hierarchical p         %            0.0116 1.2      <fn>    <NULL>  <NULL> stat_1    
121 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ2        AEDECOD   CONJUNCTIVITIS            hierarchical n         n            0      0        0       <NULL>  <NULL> stat_2    
122 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ2        AEDECOD   CONJUNCTIVITIS            hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
123 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ2        AEDECOD   CONJUNCTIVITIS            hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_2    
124 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ2        AEDECOD   CONJUNCTIVITIS            hierarchical n         n            0      0        0       <NULL>  <NULL> stat_3    
125 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ2        AEDECOD   CONJUNCTIVITIS            hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
126 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ2        AEDECOD   CONJUNCTIVITIS            hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_3    
127 TRT01A Placebo              AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical n         n            0      0        0       <NULL>  <NULL> stat_1    
128 TRT01A Placebo              AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
129 TRT01A Placebo              AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_1    
130 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical n         n            1      1        0       <NULL>  <NULL> stat_2    
131 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
132 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
133 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical n         n            1      1        0       <NULL>  <NULL> stat_3    
134 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
135 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              <NA>      <NULL>       OCMQ01NAM OCMQ3                     hierarchical p         %            0.0104 1.0      <fn>    <NULL>  <NULL> stat_3    
136 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ3        AEDECOD   VISION BLURRED            hierarchical n         n            0      0        0       <NULL>  <NULL> stat_1    
137 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ3        AEDECOD   VISION BLURRED            hierarchical N         N           86      86       0       <NULL>  <NULL> stat_1    
138 TRT01A Placebo              AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ3        AEDECOD   VISION BLURRED            hierarchical p         %            0      0.0      <fn>    <NULL>  <NULL> stat_1    
139 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ3        AEDECOD   VISION BLURRED            hierarchical n         n            1      1        0       <NULL>  <NULL> stat_2    
140 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ3        AEDECOD   VISION BLURRED            hierarchical N         N           72      72       0       <NULL>  <NULL> stat_2    
141 TRT01A Xanomeline High Dose AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ3        AEDECOD   VISION BLURRED            hierarchical p         %            0.0139 1.4      <fn>    <NULL>  <NULL> stat_2    
142 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ3        AEDECOD   VISION BLURRED            hierarchical n         n            1      1        0       <NULL>  <NULL> stat_3    
143 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ3        AEDECOD   VISION BLURRED            hierarchical N         N           96      96       0       <NULL>  <NULL> stat_3    
144 TRT01A Xanomeline Low Dose  AEBODSYS EYE DISORDERS                              OCMQ01NAM OCMQ3        AEDECOD   VISION BLURRED            hierarchical p         %            0.0104 1.0      <fn>    <NULL>  <NULL> stat_3    
Source Code
---
title: Subjects With Adverse Events by Organ System, OCMQ (Broad) and Preferred Term, Safety Population, Pooled Analysis (or Trial X)
subtitle: FDA Table 43
categories: [table, FDA, safety, adverse events]
---

::::: columns

:::: {.column width="52%"}
### FDA IG Shell

![](ig_shell.png){fig-alt="FDA IG example table shell" .lightbox width=100%}

### Programming Notes

**Background and Instructions**

[N/A (per FDA IG)](https://www.fda.gov/media/187065/download)

**Customization**

[N/A (per FDA IG)](https://www.fda.gov/media/187065/download)

::::

:::: {.column width="4%"}
::::

:::: {.column width="44%"}
### Output

```{r out-result, echo=FALSE, fig.align='center', out.width='100%'}
knitr::include_graphics("result.png")
```

::::

:::::

::: panel-tabset
## Full Code

```{r fullcode, file="../../../inst/templates/fda-table_43.R", message=FALSE, warning=FALSE, results='hide'}
```

## Table

```{r tbl}
tbl
```

## ARD

```{r ard, message=FALSE, warning=FALSE}
withr::local_options(width = 9999, tibble.print_max = Inf)
print(ard, columns = "all")
```

:::
 
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