script.R

Execution end time

2025-08-14T21:34:27 Coordinated Universal Time

Path to script

/home/jeffreyd/examples/logging/script.R

Summary

success

Script

# file: script.R
library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':

    filter, lag
The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union
file_path <- "script.log"

average_mpg <- mtcars %>%
  group_by(cyl) %>%
  summarise(average_mpg = mean(mpg, na.rm = TRUE))

model <- lm(mpg ~ wt, data = mtcars)
summary(model)
Call:
lm(formula = mpg ~ wt, data = mtcars)

Residuals:
    Min      1Q  Median      3Q     Max 
-4.5432 -2.3647 -0.1252  1.4096  6.8727 

Coefficients:
            Estimate Std. Error t value Pr(>|t|)    
(Intercept)  37.2851     1.8776  19.858  < 2e-16 ***
wt           -5.3445     0.5591  -9.559 1.29e-10 ***
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1

Residual standard error: 3.046 on 30 degrees of freedom
Multiple R-squared:  0.7528,    Adjusted R-squared:  0.7446 
F-statistic: 91.38 on 1 and 30 DF,  p-value: 1.294e-10
# log file path: script.log

Session info

Platform

Setting Value
version R version 4.4.3 (2025-02-28)
os Ubuntu 22.04.5 LTS
system x86_64, linux-gnu
ui X11
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz Etc/UTC
date 2025-08-14
pandoc 3.2 @ /usr/lib/rstudio-server/bin/quarto/bin/tools/x86_64/ (via rmarkdown)
quarto 1.6.42 @ /usr/local/bin/quarto

R Packages

Package Version Attached Source
cli 3.6.5 No RSPM (R 4.4.3)
digest 0.6.37 No RSPM
dplyr 1.1.4 Yes RSPM
evaluate 1.0.4 No RSPM (R 4.4.3)
fastmap 1.2.0 No RSPM
generics 0.1.4 No RSPM (R 4.4.3)
glue 1.8.0 No RSPM
htmltools 0.5.8.1 No RSPM
jsonlite 2.0.0 No RSPM (R 4.4.1)
knitr 1.50 No RSPM (R 4.4.1)
lattice 0.22-7 No RSPM (R 4.4.3)
lifecycle 1.0.4 No RSPM
magrittr 2.0.3 No RSPM
Matrix 1.7-3 No RSPM (R 4.4.3)
pillar 1.11.0 No RSPM (R 4.4.3)
pkgconfig 2.0.3 No RSPM
png 0.1-8 No RSPM
R6 2.6.1 No RSPM (R 4.4.1)
Rcpp 1.1.0 No RSPM (R 4.4.3)
reticulate 1.43.0 No RSPM
rlang 1.1.6 No RSPM (R 4.4.3)
rmarkdown 2.29 No RSPM (R 4.4.1)
rstudioapi 0.17.1 No RSPM (R 4.4.1)
sessioninfo 1.2.3 No RSPM (R 4.4.1)
tibble 3.3.0 No RSPM (R 4.4.3)
tidyselect 1.2.1 No RSPM
vctrs 0.6.5 No RSPM
xfun 0.52 No RSPM (R 4.4.3)
yaml 2.3.10 No RSPM

Environment variables

Variable Value
_R_CHECK_COMPILATION_FLAGS_KNOWN_ -Wformat -Werror=format-security -Wdate-time
AWS_ROLE_ARN
AWS_ROLE_SESSION_NAME jeffreyd
BASH_ENV /shared/jammy-module/lmod/lmod/init/bash
BROWSER /usr/lib/rstudio-server/bin/postback/rpostback-browser
CALLR_IS_RUNNING true
CLICOLOR_FORCE 1
CONDA_SHLVL 0
DENO_DOM_PLUGIN /opt/quarto/bin/tools/x86_64/deno_dom/libplugin.so
DENO_NO_UPDATE_CHECK 1
DENO_TLS_CA_STORE system,mozilla
DISPLAY :0
EDITOR nano
FCEDIT ex
GIT_CONFIG_SYSTEM /tmp/jeffreyd/posit-workbench/gitconfig
GIT_EDITOR nano
GIT_PAGER less
HISTCONTROL ignoreboth
HOME /home/jeffreyd
HOST posit-workbench-deployment-jeffreyd-aixmf7-769b46dc7-vq7pv
LANG en_US.UTF-8
LMOD_CMD /shared/jammy-module/lmod/lmod/libexec/lmod
LMOD_DIR /shared/jammy-module/lmod/lmod/libexec
LMOD_PKG /shared/jammy-module/lmod/lmod
LMOD_ROOT /shared/jammy-module/lmod
LMOD_SETTARG_FULL_SUPPORT no
LMOD_sys Linux
LMOD_VERSION 8.7
LN_S ln -s
LOGNAME jeffreyd
MAKE make
MANPATH /shared/jammy-module/lmod/lmod/share/man:
MODULEPATH :/shared/jammy-module/eb/modules/all/Core:/shared/jammy-module/eb/modules/all/Compiler/GCCcore/12.2.0:/shared/jammy-module/eb/modules/all/Compiler/GCCcore/13.3.0
MODULEPATH_ROOT /shared/jammy-module/modulefiles
MODULESHOME /shared/jammy-module/lmod/lmod
MPLENGINE tkAgg
OCEAN_BIN /apps/tools/bin
OCEAN_DATA /apps/data
OCEAN_HBR /ocean/harbour
OCEAN_IO_R_CONTAINER
OCEAN_IO_SAS_CONTAINER
OCEAN_MACROS /apps/tools/macros
OCEAN_PROGRAMS /apps/tools/programs
OCEAN_TEMP /var/tmp
OCEAN_UTILS /apps/tools/utilities
OCI_INC /usr/include/oracle/23/client64
OCI_LIB /usr/lib/oracle/23/client64/lib
OPENSSL_CONF /etc/ssl/
PAGER /usr/bin/pager
PATH /apps/tools/bin:/usr/bin:/bin:/usr/bin:/bin:/opt/conda/bin:/usr/lib/rstudio-server/bin:/apps/bin:/root/.TinyTeX/bin/x86_64-linux:/opt/cmdstan/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/apps/tools/bin
PERL5LIB /apps/tools/utilities/perllib
PKGLOAD_PARENT_TEMPDIR /tmp/RtmpF3Jspt
POSIT_ENCRYPTION_MAXIMUM_VERSION 0
POSIT_ENCRYPTION_MINIMUM_VERSION 0
PROCESSX_PSe5199ddb33e_1755207261 YES
PROCESSX_PSe51f55a269780_1755207262 YES
PROMPT_COMMAND (_RS_PWD=$(dirs +0); echo -ne "\033]0;${_RS_PWD}\007"; unset _RS_PWD)
PWD /tmp/Rtmpl3BT79/filee519918e304fc
QUARTO_DENO /opt/quarto/bin/tools/x86_64/deno
QUARTO_FILTER_DEPENDENCY_FILE /tmp/quarto-session215f734e2ae71ce8/2cc37803cffa59db/9cfd0004fd9a5f5
QUARTO_PROFILE
QUARTO_PROJECT_DIR /tmp/Rtmpl3BT79/filee519918e304fc
QUARTO_PROJECT_ROOT /tmp/Rtmpl3BT79/filee519918e304fc
QUARTO_R /usr/lib/R/bin
QUARTO_ROOT /
R_ARCH
R_BROWSER xdg-open
R_BZIPCMD /bin/bzip2
R_CLI_HAS_HYPERLINK_IDE_HELP true
R_CLI_HAS_HYPERLINK_IDE_RUN true
R_CLI_HAS_HYPERLINK_IDE_VIGNETTE true
R_DOC_DIR /usr/share/R/doc
R_GZIPCMD /bin/gzip -n
R_HOME /usr/lib/R
R_INCLUDE_DIR /usr/share/R/include
R_LIBS_SITE /usr/local/lib/R/site-library/:/usr/local/lib/R/site-library/:/usr/local/lib/R/site-library/:/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library:/usr/lib/R/library:/usr/lib/R/library
R_LIBS_USER /home/jeffreyd/R/x86_64-pc-linux-gnu-library/4.4
R_PAPERSIZE letter
R_PAPERSIZE_USER letter
R_PDFVIEWER /usr/bin/xdg-open
R_PLATFORM x86_64-pc-linux-gnu
R_PRINTCMD /usr/bin/lpr
R_RD4PDF times,inconsolata,hyper
R_SESSION_TMPDIR /tmp/Rtmpqd2Y2Q
R_SHARE_DIR /usr/share/R/share
R_STRIP_SHARED_LIB strip --strip-unneeded
R_STRIP_STATIC_LIB strip --strip-debug
R_TEXI2DVICMD /usr/bin/texi2dvi
R_UNZIPCMD /usr/bin/unzip
R_ZIPCMD /usr/bin/zip
RETICULATE_MINICONDA_ENABLED
RS_SERVER_ADDRESS https://jeffreyd-aixmf7.eu.aa.ocean.roche.com
RS_SERVER_TMP_DIR /var/run/rstudio-server/rstudio-rserver
RS_SESSION_RPC_COOKIE user-id=jeffreyd&#124;Fri%2C%2014%20Aug%202026%2021%3A30%3A07%20GMT&#124;Xd%2FjXHMZTIdupwvtJKOA3pKqGALEYUFla0ZEjcILH4Q%3D; path=/; HttpOnly
RS_SESSION_TMP_DIR /var/run/rstudio-server/rstudio-rsession
RSESSION_PROFILE_OPTIONS
RSTUDIO 1
RSTUDIO_CHILD_PROCESS_PANE terminal
RSTUDIO_CLI_HYPERLINKS true
RSTUDIO_CONSOLE_COLOR 256
RSTUDIO_CONSOLE_WIDTH 144
RSTUDIO_DISABLE_PROJECT_SHARING 1
RSTUDIO_DISTRIBUTED_LOCKING_ENABLED 1
RSTUDIO_MULTI_SESSION 1
RSTUDIO_PANDOC /usr/lib/rstudio-server/bin/quarto/bin/tools/x86_64
RSTUDIO_PROGRAM_MODE server
RSTUDIO_PROJ_NAME examples
RSTUDIO_R_MODULE
RSTUDIO_R_MODULE_SCRIPT ~/.bashrc
RSTUDIO_R_PRELAUNCH_SCRIPT
RSTUDIO_R_REPO
RSTUDIO_R_VERSION_LABEL
RSTUDIO_SESSION_ID 5e93b404
RSTUDIO_SESSION_PID 937747
RSTUDIO_SESSION_STREAM jeffreyd-ds/e37193bc8065c/5e93b404
RSTUDIO_STANDALONE_PORT 36535
RSTUDIO_TERM 5C1C1F4A
RSTUDIO_USER_IDENTITY jeffreyd
RSTUDIO_VERSION 2024.12.1+563.pro5
SED /bin/sed
SF_PARTNER posit_workbench_rstudio/2024.12.1+563.pro5
SHELL /bin/bash
SHLVL 4
SPARK_CONNECT_USER_AGENT posit-workbench-rstudio/2024.12.1+563.pro5
TAR /bin/tar
TERM dumb
TNS_ADMIN /apps/tools/config
USER jeffreyd
USERNAME jeffreyd
VISUAL nano
WHIRL_LOG_MSG /tmp/Rtmpl3BT79/filee519918e304fc/log_msg.json

Options

Option Value
add.smooth TRUE
ambiguousMethodSelection function (cond) , NULL
BioC_mirror https://packages.roche.com/Bioconductor
bitmapType cairo
browser xdg-open
browserNLdisabled FALSE
callr.condition_handler_cli_message function (msg) , {, custom_handler <- getOption("cli.default_handler"), if (is.function(custom_handler)) {, custom_handler(msg), }, else {, cli_server_default(msg), }, }
catch.script.errors FALSE
CBoundsCheck FALSE
check.bounds FALSE
citation.bibtex.max 1
continue +
contrasts contr.treatment, contr.poly
defaultPackages datasets , utils , grDevices, graphics , stats , methods
demo.ask default
deparse.cutoff 60
device function (width = 7, height = 7, ...) , {, grDevices::pdf(NULL, width, height, ...), }
device.ask.default FALSE
digits 7
download.file.method libcurl
dplyr.show_progress TRUE
dvipscmd dvips
echo FALSE
editor nano
encoding native.enc
example.ask default
expressions 5000
help.search.types vignette, demo , help
help.try.all.packages FALSE
htmltools.preserve.raw TRUE
HTTPUserAgent R/4.4.3 R (4.4.3 x86_64-pc-linux-gnu x86_64 linux-gnu)
internet.info 2
keep.parse.data TRUE
keep.parse.data.pkgs FALSE
keep.source FALSE
keep.source.pkgs FALSE
knitr.in.progress TRUE
locatorBell TRUE
mailer mailto
matprod default
max.contour.segments 25000
max.print 99999
menu.graphics TRUE
na.action na.omit
nwarnings 50
OutDec .
pager /usr/lib/R/bin/pager
papersize letter
PCRE_limit_recursion NA
PCRE_study FALSE
PCRE_use_JIT TRUE
pdfviewer /usr/bin/xdg-open
pkgType source
printcmd /usr/bin/lpr
prompt >
repos https://rspm.roche.com/CRAN/latest
rlang_trace_top_env <environment: R_GlobalEnv>
scipen 0
show.coef.Pvalues TRUE
show.error.messages TRUE
show.signif.stars TRUE
showErrorCalls TRUE
showNCalls 50
showWarnCalls FALSE
str no, 3, 4, 99, TRUE, function (x, ...) , format(x, trim = TRUE, drop0trailing = TRUE, ...)
str.dendrogram.last `
texi2dvi /usr/bin/texi2dvi
tikzMetricsDictionary dummy-tikzDictionary
timeout 60
try.outFile 3
ts.eps 1e-05
ts.S.compat FALSE
unzip /usr/bin/unzip
useFancyQuotes FALSE
verbose FALSE
warn 0
warning.length 1000
warnPartialMatchArgs FALSE
warnPartialMatchAttr FALSE
warnPartialMatchDollar FALSE
width 80