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- logrx Metadata -
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This log was generated using logrx 0.1.1.9002
logrx package version: 0.1.1.9002
logrx build: local
logrx link to repository: https://github.com/pharmaverse/logrx
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- User and File Information -
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User: thomaspb
File Name: adsl.R
File Path: /Users/thomaspb/Projects/logrx/data-raw
File HashSum: 1e529cde562616cf52ef6090eb932ca07f82e474
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- Session Information -
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─ Session info ─────────────────────────────────────────────────────────────────
setting value
version R version 4.2.1 (2022-06-23)
os macOS Ventura 13.0.1
system aarch64, darwin20
ui RStudio
language (EN)
collate en_GB.UTF-8
ctype en_GB.UTF-8
tz Europe/London
date 2022-12-08
rstudio 2022.07.2+576 Spotted Wakerobin (desktop)
pandoc NA
─ Packages ─────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
admiral * 0.8.4 2022-10-14 [1] CRAN (R 4.2.0)
admiral.test * 0.3.0 2022-09-01 [1] CRAN (R 4.2.0)
admiraldev 0.1.0 2022-08-26 [1] CRAN (R 4.2.0)
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.2.0)
callr 3.7.2 2022-08-22 [1] CRAN (R 4.2.0)
cli 3.4.1 2022-09-23 [1] CRAN (R 4.2.0)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.0)
cyclocomp 1.1.0 2016-09-10 [1] CRAN (R 4.2.0)
desc 1.4.2 2022-09-08 [1] CRAN (R 4.2.0)
diffdf * 1.0.4 2020-03-17 [1] CRAN (R 4.2.0)
digest 0.6.29 2021-12-01 [1] CRAN (R 4.2.0)
dplyr * 1.0.10 2022-09-01 [1] CRAN (R 4.2.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.0)
fansi 1.0.3 2022-03-24 [1] CRAN (R 4.2.0)
fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.2.0)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.2.0)
glue 1.6.2 2022-02-24 [1] CRAN (R 4.2.0)
hms 1.1.2 2022-08-19 [1] CRAN (R 4.2.0)
htmltools 0.5.3 2022-07-18 [1] CRAN (R 4.2.0)
httpuv 1.6.6 2022-09-08 [1] CRAN (R 4.2.0)
later 1.3.0 2021-08-18 [1] CRAN (R 4.2.0)
lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.2.0)
lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.2.0)
lintr 3.0.1 2022-09-13 [1] CRAN (R 4.2.0)
logrx * 0.1.1.9002 2022-12-08 [1] local
lubridate * 1.9.0 2022-11-06 [1] CRAN (R 4.2.0)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.2.0)
miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.2.0)
pillar 1.8.1 2022-08-19 [1] CRAN (R 4.2.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.0)
processx 3.7.0 2022-07-07 [1] CRAN (R 4.2.0)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.2.0)
ps 1.7.1 2022-06-18 [1] CRAN (R 4.2.0)
purrr 0.3.5 2022-10-06 [1] CRAN (R 4.2.0)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.0)
Rcpp 1.0.9 2022-07-08 [1] CRAN (R 4.2.0)
remotes 2.4.2 2021-11-30 [1] CRAN (R 4.2.0)
rex 1.2.1 2021-11-26 [1] CRAN (R 4.2.0)
rlang 1.0.6 2022-09-24 [1] CRAN (R 4.2.0)
rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.2.0)
rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.2.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.0)
shiny 1.7.2 2022-07-19 [1] CRAN (R 4.2.0)
stringi 1.7.8 2022-07-11 [1] CRAN (R 4.2.0)
stringr * 1.4.1 2022-08-20 [1] CRAN (R 4.2.0)
tibble 3.1.8 2022-07-22 [1] CRAN (R 4.2.0)
tidyr 1.2.1 2022-09-08 [1] CRAN (R 4.2.0)
tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.2.0)
timechange * 0.1.1 2022-11-04 [1] CRAN (R 4.2.0)
utf8 1.2.2 2021-07-24 [1] CRAN (R 4.2.0)
vctrs 0.4.2 2022-09-29 [1] CRAN (R 4.2.0)
waiter 0.2.5 2022-01-03 [1] CRAN (R 4.2.0)
withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.0)
xml2 1.3.3 2021-11-30 [1] CRAN (R 4.2.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.0)
[1] /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library
─ External software ────────────────────────────────────────────────────────────
setting value
cairo
cairoFT
pango
png
jpeg
tiff
tcl
curl 7.84.0
zlib 1.2.11
bzlib 1.0.8, 13-Jul-2019
xz 5.2.5
PCRE 10.39 2021-10-29
ICU 70.1
TRE TRE 0.8.0 R_fixes (BSD)
iconv GNU libiconv 1.11
readline 5.2
BLAS
lapack /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
lapack_version 3.10.1
─ Python configuration ─────────────────────────────────────────────────────────
Python is not available
────────────────────────────────────────────────────────────────────────────────
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- Masked Functions -
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function `plot` from {package:base} by package:graphics
function `body<-` from {package:base} by package:methods
function `kronecker` from {package:base} by package:methods
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- Program Run Time Information -
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Start time: 2022-12-08 10:27:31 GMT
End time: 2022-12-08 10:27:32 GMT
Run time: 1 seconds
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- Errors and Warnings -
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Errors:
Warnings:
There are columns in BASE that are not in COMPARE !!
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- Messages, Output, and Result -
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Messages:
Attaching package: ‘dplyr’
The following object is masked from ‘package:admiral’: filter_if
The following objects are masked from ‘package:stats’: filter, lag
The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union
Loading required package: timechange
Attaching package: ‘lubridate’
The following objects are masked from ‘package:base’: date, intersect, setdiff, union
Please check for this important message!!
Output:
Rows: 3
Columns: 51
$ STUDYID <chr> "CDISCPILOT01", "CDISCPILOT01", "CDISCPILOT01"
$ USUBJID <chr> "01-701-1015", "01-701-1023", "01-701-1028"
$ SUBJID <chr> "1015", "1023", "1028"
$ RFSTDTC <chr> "2014-01-02", "2012-08-05", "2013-07-19"
$ RFENDTC <chr> "2014-07-02", "2012-09-02", "2014-01-14"
$ RFXSTDTC <chr> "2014-01-02", "2012-08-05", "2013-07-19"
$ RFXENDTC <chr> "2014-07-02", "2012-09-01", "2014-01-14"
$ RFICDTC <chr> NA, NA, NA
$ RFPENDTC <chr> "2014-07-02T11:45", "2013-02-18", "2014-01-14T11:10"
$ DTHDTC <chr> NA, NA, NA
$ DTHFL <chr> NA, NA, NA
$ SITEID <chr> "701", "701", "701"
$ AGE <dbl> 63, 64, 71
$ AGEU <chr> "YEARS", "YEARS", "YEARS"
$ SEX <chr> "F", "M", "M"
$ RACE <chr> "WHITE", "WHITE", "WHITE"
$ ETHNIC <chr> "HISPANIC OR LATINO", "HISPANIC OR LATINO", "NOT HISPANIC OR LATINO"
$ ARMCD <chr> "Pbo", "Pbo", "Xan_Hi"
$ ARM <chr> "Placebo", "Placebo", "Xanomeline High Dose"
$ ACTARMCD <chr> "Pbo", "Pbo", "Xan_Hi"
$ ACTARM <chr> "Placebo", "Placebo", "Xanomeline High Dose"
$ COUNTRY <chr> "USA", "USA", "USA"
$ DMDTC <chr> "2013-12-26", "2012-07-22", "2013-07-11"
$ DMDY <dbl> -7, -14, -8
$ TRT01P <chr> "Placebo", "Placebo", "Xanomeline High Dose"
$ TRT01A <chr> "Placebo", "Placebo", "Xanomeline High Dose"
$ TRTSDTM <dttm> 2014-01-02, 2012-08-05, 2013-07-19
$ TRTSTMF <chr> "H", "H", "H"
$ TRTEDTM <dttm> 2014-07-02 23:59:59, 2012-09-01 23:59:59, 2014-01-14 23:59:59
$ TRTETMF <chr> "H", "H", "H"
$ TRTSDT <date> 2014-01-02, 2012-08-05, 2013-07-19
$ TRTEDT <date> 2014-07-02, 2012-09-01, 2014-01-14
$ TRTDURD <dbl> 182, 28, 180
$ SCRFDT <date> NA, NA, NA
$ EOSDT <date> 2014-07-02, 2012-09-02, 2014-01-14
$ EOSSTT <chr> "COMPLETED", "DISCONTINUED", "COMPLETED"
$ FRVDT <date> NA, 2013-02-18, NA
$ RANDDT <date> 2014-01-02, 2012-08-05, 2013-07-19
$ DTHDT <date> NA, NA, NA
$ DTHDTF <chr> NA, NA, NA
$ DTHADY <dbl> NA, NA, NA
$ LDDTHELD <dbl> NA, NA, NA
$ LSTALVDT <date> 2014-07-02, 2012-09-02, 2014-01-14
$ SAFFL <chr> "Y", "Y", "Y"
$ RACEGR1 <chr> "White", "White", "White"
$ AGEGR1 <chr> "18-64", "18-64", ">64"
$ REGION1 <chr> "NA", "NA", "NA"
$ LDDTHGR1 <chr> NA, NA, NA
$ DTH30FL <chr> NA, NA, NA
$ DTHA30FL <chr> NA, NA, NA
$ DTHB30FL <chr> NA, NA, NA
Result:
NULL
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- Log Output File -
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Log name: adsl.log
Log path: /Users/thomaspb/Projects/logrx/data-raw