--------------------------------------------------------------------------------
-                                logrx Metadata                                -
--------------------------------------------------------------------------------
This log was generated using logrx 0.3.2.9000
logrx package version: 0.3.2.9000
logrx build: local
logrx link to repository: https://github.com/pharmaverse/logrx
--------------------------------------------------------------------------------
-                          User and File Information                           -
--------------------------------------------------------------------------------
User: r590548
File Name: adsl.R
File Path: /cloud/project/data-raw/adsl
File HashSum: 8fc6a1151e2e8129a2a9e10586484e2e09655362
--------------------------------------------------------------------------------
-                             Session Information                              -
--------------------------------------------------------------------------------
─ Session info ─────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.2.3 (2023-03-15)
 os       Ubuntu 20.04.6 LTS
 system   x86_64, linux-gnu
 ui       RStudio
 language (EN)
 collate  C.UTF-8
 ctype    C.UTF-8
 tz       UTC
 date     2025-04-30
 rstudio  2024.04.2+764.pro1 Chocolate Cosmos (server)
 pandoc   NA
 quarto   1.6.42 @ /usr/bin/quarto

─ Packages ─────────────────────────────────────────────────────────────────────
 package         * version    date (UTC) lib source
 admiral         * 1.2.0      2025-01-15 [1] RSPM (R 4.2.0)
 admiral.test    * 0.7.0      2023-09-10 [1] RSPM (R 4.2.0)
 admiraldev        1.2.0      2025-01-15 [1] RSPM (R 4.2.0)
 assertthat        0.2.1      2019-03-21 [1] RSPM (R 4.2.0)
 cli               3.6.4      2025-02-13 [1] RSPM (R 4.2.0)
 diffdf          * 1.1.1      2024-09-24 [1] RSPM (R 4.2.0)
 digest            0.6.37     2024-08-19 [1] RSPM (R 4.2.0)
 dplyr           * 1.1.4      2023-11-17 [1] RSPM (R 4.2.0)
 generics          0.1.3      2022-07-05 [1] RSPM (R 4.2.0)
 glue              1.8.0      2024-09-30 [1] RSPM (R 4.2.0)
 hms               1.1.3      2023-03-21 [1] RSPM (R 4.2.0)
 lifecycle         1.0.4      2023-11-07 [1] RSPM (R 4.2.0)
 logrx             0.3.2.9000 2025-04-30 [1] local
 lubridate       * 1.9.4      2024-12-08 [1] RSPM (R 4.2.0)
 magrittr          2.0.3      2022-03-30 [1] RSPM (R 4.2.0)
 pharmaversesdtm * 1.2.0      2025-01-23 [1] RSPM (R 4.2.0)
 pillar            1.10.1     2025-01-07 [1] RSPM (R 4.2.0)
 pkgconfig         2.0.3      2019-09-22 [1] RSPM (R 4.2.0)
 purrr             1.0.4      2025-02-05 [1] RSPM (R 4.2.0)
 R6                2.6.1      2025-02-15 [1] RSPM (R 4.2.0)
 rlang             1.1.5      2025-01-17 [1] RSPM (R 4.2.0)
 rstudioapi        0.17.1     2024-10-22 [1] RSPM (R 4.2.0)
 sessioninfo       1.2.3      2025-02-05 [1] RSPM (R 4.2.0)
 stringi           1.8.4      2024-05-06 [1] RSPM (R 4.2.0)
 stringr         * 1.5.1      2023-11-14 [1] RSPM (R 4.2.0)
 tibble            3.2.1      2023-03-20 [1] RSPM (R 4.2.0)
 tidyr             1.3.1      2024-01-24 [1] RSPM (R 4.2.0)
 tidyselect        1.2.1      2024-03-11 [1] RSPM (R 4.2.0)
 timechange        0.3.0      2024-01-18 [1] RSPM (R 4.2.0)
 vctrs             0.6.5      2023-12-01 [1] RSPM (R 4.2.0)
 withr             3.0.2      2024-10-28 [1] RSPM (R 4.2.0)

 [1] /cloud/lib/x86_64-pc-linux-gnu-library/4.2
 [2] /opt/R/4.2.3/lib/R/library
 * ── Packages attached to the search path.

─ External software ────────────────────────────────────────────────────────────
 setting        value
 cairo          1.16.0
 cairoFT
 pango          1.44.7
 png            1.6.37
 jpeg           8.0
 tiff           LIBTIFF, Version 4.1.0
 tcl            8.6.10
 curl           7.68.0
 zlib           1.2.11
 bzlib          1.0.8, 13-Jul-2019
 xz             5.2.4
 PCRE           10.34 2019-11-21
 ICU            66.1
 TRE            TRE 0.8.0 R_fixes (BSD)
 iconv          glibc 2.31
 readline       8.0

      BLAS           /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so

      lapack         /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
 lapack_version 3.9.0

─ Python configuration ─────────────────────────────────────────────────────────
 Python is not available

────────────────────────────────────────────────────────────────────────────────
--------------------------------------------------------------------------------
-                               Masked Functions                               -
--------------------------------------------------------------------------------
function `admiral_ae` from {package:admiral.test} by .GlobalEnv
function `admiral_dm` from {package:admiral.test} by .GlobalEnv
function `admiral_ds` from {package:admiral.test} by .GlobalEnv
function `admiral_ex` from {package:admiral.test} by .GlobalEnv
function `admiral_lb` from {package:admiral.test} by .GlobalEnv
function `ts` from {package:stats} by package:pharmaversesdtm
function `cm` from {package:grDevices} by package:pharmaversesdtm
function `%>%` from {package:dplyr, package:admiral} by package:stringr
function `intersect` from {package:dplyr, package:base} by package:lubridate
function `setdiff` from {package:dplyr, package:base} by package:lubridate
function `union` from {package:dplyr, package:base} by package:lubridate
function `Arith` from {package:methods} by package:lubridate
function `Compare` from {package:methods} by package:lubridate
function `show` from {package:methods} by package:lubridate
function `as.difftime` from {package:base} by package:lubridate
function `date` from {package:base} by package:lubridate
function `desc` from {package:admiral} by package:dplyr
function `filter` from {package:stats} by package:dplyr
function `lag` from {package:stats} by package:dplyr
function `setequal` from {package:base} by package:dplyr
function `plot` from {package:base} by package:graphics
function `body<-` from {package:base} by package:methods
function `kronecker` from {package:base} by package:methods
--------------------------------------------------------------------------------
-                          Used Package and Functions                          -
--------------------------------------------------------------------------------
{package:admiral} convert_blanks_to_na, derive_vars_dtm, derive_vars_merged, exprs, derive_vars_dtm_to_dt, derive_var_trtdurd, derive_vars_dt, derive_vars_duration, derive_vars_extreme_event, event, convert_dtc_to_dt, derive_var_merged_exist_flag
{package:base} library, c, %in%, is.na, list, grepl, file.exists, dir.create, save, file.path, message
{package:diffdf} diffdf
{package:dplyr} case_when, between, mutate, if_else, slice, glimpse, select
{package:stringr} %>%, str_detect
{package:tools} R_user_dir
--------------------------------------------------------------------------------
-                         Program Run Time Information                         -
--------------------------------------------------------------------------------
Start time: 2025-04-30 15:15:52 UTC
End time: 2025-04-30 15:15:57 UTC
Run time: 5 seconds
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-                             Errors and Warnings                              -
--------------------------------------------------------------------------------
Errors:
    

Warnings:
    
There are columns in BASE that are not in COMPARE !!
--------------------------------------------------------------------------------
-                         Messages, Output, and Result                         -
--------------------------------------------------------------------------------
Messages:
    Please check for this important message!!
Output:
    Rows: 3
    Columns: 54
    $ STUDYID  <chr> "CDISCPILOT01", "CDISCPILOT01", "CDISCPILOT01"
    $ USUBJID  <chr> "01-701-1015", "01-701-1023", "01-701-1028"
    $ SUBJID   <chr> "1015", "1023", "1028"
    $ RFSTDTC  <chr> "2014-01-02", "2012-08-05", "2013-07-19"
    $ RFENDTC  <chr> "2014-07-02", "2012-09-02", "2014-01-14"
    $ RFXSTDTC <chr> "2014-01-02", "2012-08-05", "2013-07-19"
    $ RFXENDTC <chr> "2014-07-02", "2012-09-01", "2014-01-14"
    $ RFICDTC  <chr> NA, NA, NA
    $ RFPENDTC <chr> "2014-07-02T11:45", "2013-02-18", "2014-01-14T11:10"
    $ DTHDTC   <chr> NA, NA, NA
    $ DTHFL    <chr> NA, NA, NA
    $ SITEID   <chr> "701", "701", "701"
    $ AGE      <dbl> 63, 64, 71
    $ AGEU     <chr> "YEARS", "YEARS", "YEARS"
    $ SEX      <chr> "F", "M", "M"
    $ RACE     <chr> "WHITE", "WHITE", "WHITE"
    $ ETHNIC   <chr> "HISPANIC OR LATINO", "HISPANIC OR LATINO", "NOT HISPANIC OR LATINO"
    $ ARMCD    <chr> "Pbo", "Pbo", "Xan_Hi"
    $ ARM      <chr> "Placebo", "Placebo", "Xanomeline High Dose"
    $ ACTARMCD <chr> "Pbo", "Pbo", "Xan_Hi"
    $ ACTARM   <chr> "Placebo", "Placebo", "Xanomeline High Dose"
    $ COUNTRY  <chr> "USA", "USA", "USA"
    $ DMDTC    <chr> "2013-12-26", "2012-07-22", "2013-07-11"
    $ DMDY     <dbl> -7, -14, -8
    $ TRT01P   <chr> "Placebo", "Placebo", "Xanomeline High Dose"
    $ TRT01A   <chr> "Placebo", "Placebo", "Xanomeline High Dose"
    $ TRTSDTM  <dttm> 2014-01-02, 2012-08-05, 2013-07-19
    $ TRTSTMF  <chr> "H", "H", "H"
    $ TRTEDTM  <dttm> 2014-07-02 23:59:59, 2012-09-01 23:59:59, 2014-01-14 23:59:59
    $ TRTETMF  <chr> "H", "H", "H"
    $ TRTSDT   <date> 2014-01-02, 2012-08-05, 2013-07-19
    $ TRTEDT   <date> 2014-07-02, 2012-09-01, 2014-01-14
    $ TRTDURD  <dbl> 182, 28, 180
    $ SCRFDT   <date> NA, NA, NA
    $ EOSDT    <date> 2014-07-02, 2012-09-02, 2014-01-14
    $ EOSSTT   <chr> "COMPLETED", "DISCONTINUED", "COMPLETED"
    $ FRVDT    <date> NA, 2013-02-18, NA
    $ RANDDT   <date> 2014-01-02, 2012-08-05, 2013-07-19
    $ DTHDT    <date> NA, NA, NA
    $ DTHDTF   <chr> NA, NA, NA
    $ DTHADY   <dbl> NA, NA, NA
    $ LDDTHELD <dbl> NA, NA, NA
    $ DTHCAUS  <chr> NA, NA, NA
    $ DTHDOM   <chr> NA, NA, NA
    $ DTHCGR1  <chr> NA, NA, NA
    $ LSTALVDT <date> 2014-07-02, 2012-09-02, 2014-01-14
    $ SAFFL    <chr> "Y", "Y", "Y"
    $ RACEGR1  <chr> "White", "White", "White"
    $ AGEGR1   <chr> "18-64", "18-64", ">64"
    $ REGION1  <chr> "NA", "NA", "NA"
    $ LDDTHGR1 <chr> NA, NA, NA
    $ DTH30FL  <chr> NA, NA, NA
    $ DTHA30FL <chr> NA, NA, NA
    $ DTHB30FL <chr> NA, NA, NA

Result:
    NULL
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-                               Log Output File                                -
--------------------------------------------------------------------------------
Log name: adsl.log
Log path: /cloud/project/data-raw/adsl