--------------------------------------------------------------------------------
- logrx Metadata -
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This log was generated using logrx 0.3.2.9000
logrx package version: 0.3.2.9000
logrx build: local
logrx link to repository: https://github.com/pharmaverse/logrx
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- User and File Information -
--------------------------------------------------------------------------------
User: r590548
File Name: adsl.R
File Path: /cloud/project/data-raw/adsl
File HashSum: 8fc6a1151e2e8129a2a9e10586484e2e09655362
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- Session Information -
--------------------------------------------------------------------------------
─ Session info ─────────────────────────────────────────────────────────────────
setting value
version R version 4.2.3 (2023-03-15)
os Ubuntu 20.04.6 LTS
system x86_64, linux-gnu
ui RStudio
language (EN)
collate C.UTF-8
ctype C.UTF-8
tz UTC
date 2025-04-30
rstudio 2024.04.2+764.pro1 Chocolate Cosmos (server)
pandoc NA
quarto 1.6.42 @ /usr/bin/quarto
─ Packages ─────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
admiral * 1.2.0 2025-01-15 [1] RSPM (R 4.2.0)
admiral.test * 0.7.0 2023-09-10 [1] RSPM (R 4.2.0)
admiraldev 1.2.0 2025-01-15 [1] RSPM (R 4.2.0)
assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.2.0)
cli 3.6.4 2025-02-13 [1] RSPM (R 4.2.0)
diffdf * 1.1.1 2024-09-24 [1] RSPM (R 4.2.0)
digest 0.6.37 2024-08-19 [1] RSPM (R 4.2.0)
dplyr * 1.1.4 2023-11-17 [1] RSPM (R 4.2.0)
generics 0.1.3 2022-07-05 [1] RSPM (R 4.2.0)
glue 1.8.0 2024-09-30 [1] RSPM (R 4.2.0)
hms 1.1.3 2023-03-21 [1] RSPM (R 4.2.0)
lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.2.0)
logrx 0.3.2.9000 2025-04-30 [1] local
lubridate * 1.9.4 2024-12-08 [1] RSPM (R 4.2.0)
magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.2.0)
pharmaversesdtm * 1.2.0 2025-01-23 [1] RSPM (R 4.2.0)
pillar 1.10.1 2025-01-07 [1] RSPM (R 4.2.0)
pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0)
purrr 1.0.4 2025-02-05 [1] RSPM (R 4.2.0)
R6 2.6.1 2025-02-15 [1] RSPM (R 4.2.0)
rlang 1.1.5 2025-01-17 [1] RSPM (R 4.2.0)
rstudioapi 0.17.1 2024-10-22 [1] RSPM (R 4.2.0)
sessioninfo 1.2.3 2025-02-05 [1] RSPM (R 4.2.0)
stringi 1.8.4 2024-05-06 [1] RSPM (R 4.2.0)
stringr * 1.5.1 2023-11-14 [1] RSPM (R 4.2.0)
tibble 3.2.1 2023-03-20 [1] RSPM (R 4.2.0)
tidyr 1.3.1 2024-01-24 [1] RSPM (R 4.2.0)
tidyselect 1.2.1 2024-03-11 [1] RSPM (R 4.2.0)
timechange 0.3.0 2024-01-18 [1] RSPM (R 4.2.0)
vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.2.0)
withr 3.0.2 2024-10-28 [1] RSPM (R 4.2.0)
[1] /cloud/lib/x86_64-pc-linux-gnu-library/4.2
[2] /opt/R/4.2.3/lib/R/library
* ── Packages attached to the search path.
─ External software ────────────────────────────────────────────────────────────
setting value
cairo 1.16.0
cairoFT
pango 1.44.7
png 1.6.37
jpeg 8.0
tiff LIBTIFF, Version 4.1.0
tcl 8.6.10
curl 7.68.0
zlib 1.2.11
bzlib 1.0.8, 13-Jul-2019
xz 5.2.4
PCRE 10.34 2019-11-21
ICU 66.1
TRE TRE 0.8.0 R_fixes (BSD)
iconv glibc 2.31
readline 8.0
BLAS /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
lapack /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
lapack_version 3.9.0
─ Python configuration ─────────────────────────────────────────────────────────
Python is not available
────────────────────────────────────────────────────────────────────────────────
--------------------------------------------------------------------------------
- Masked Functions -
--------------------------------------------------------------------------------
function `admiral_ae` from {package:admiral.test} by .GlobalEnv
function `admiral_dm` from {package:admiral.test} by .GlobalEnv
function `admiral_ds` from {package:admiral.test} by .GlobalEnv
function `admiral_ex` from {package:admiral.test} by .GlobalEnv
function `admiral_lb` from {package:admiral.test} by .GlobalEnv
function `ts` from {package:stats} by package:pharmaversesdtm
function `cm` from {package:grDevices} by package:pharmaversesdtm
function `%>%` from {package:dplyr, package:admiral} by package:stringr
function `intersect` from {package:dplyr, package:base} by package:lubridate
function `setdiff` from {package:dplyr, package:base} by package:lubridate
function `union` from {package:dplyr, package:base} by package:lubridate
function `Arith` from {package:methods} by package:lubridate
function `Compare` from {package:methods} by package:lubridate
function `show` from {package:methods} by package:lubridate
function `as.difftime` from {package:base} by package:lubridate
function `date` from {package:base} by package:lubridate
function `desc` from {package:admiral} by package:dplyr
function `filter` from {package:stats} by package:dplyr
function `lag` from {package:stats} by package:dplyr
function `setequal` from {package:base} by package:dplyr
function `plot` from {package:base} by package:graphics
function `body<-` from {package:base} by package:methods
function `kronecker` from {package:base} by package:methods
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- Used Package and Functions -
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{package:admiral} convert_blanks_to_na, derive_vars_dtm, derive_vars_merged, exprs, derive_vars_dtm_to_dt, derive_var_trtdurd, derive_vars_dt, derive_vars_duration, derive_vars_extreme_event, event, convert_dtc_to_dt, derive_var_merged_exist_flag
{package:base} library, c, %in%, is.na, list, grepl, file.exists, dir.create, save, file.path, message
{package:diffdf} diffdf
{package:dplyr} case_when, between, mutate, if_else, slice, glimpse, select
{package:stringr} %>%, str_detect
{package:tools} R_user_dir
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- Program Run Time Information -
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Start time: 2025-04-30 15:15:52 UTC
End time: 2025-04-30 15:15:57 UTC
Run time: 5 seconds
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- Errors and Warnings -
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Errors:
Warnings:
There are columns in BASE that are not in COMPARE !!
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- Messages, Output, and Result -
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Messages:
Please check for this important message!!
Output:
Rows: 3
Columns: 54
$ STUDYID <chr> "CDISCPILOT01", "CDISCPILOT01", "CDISCPILOT01"
$ USUBJID <chr> "01-701-1015", "01-701-1023", "01-701-1028"
$ SUBJID <chr> "1015", "1023", "1028"
$ RFSTDTC <chr> "2014-01-02", "2012-08-05", "2013-07-19"
$ RFENDTC <chr> "2014-07-02", "2012-09-02", "2014-01-14"
$ RFXSTDTC <chr> "2014-01-02", "2012-08-05", "2013-07-19"
$ RFXENDTC <chr> "2014-07-02", "2012-09-01", "2014-01-14"
$ RFICDTC <chr> NA, NA, NA
$ RFPENDTC <chr> "2014-07-02T11:45", "2013-02-18", "2014-01-14T11:10"
$ DTHDTC <chr> NA, NA, NA
$ DTHFL <chr> NA, NA, NA
$ SITEID <chr> "701", "701", "701"
$ AGE <dbl> 63, 64, 71
$ AGEU <chr> "YEARS", "YEARS", "YEARS"
$ SEX <chr> "F", "M", "M"
$ RACE <chr> "WHITE", "WHITE", "WHITE"
$ ETHNIC <chr> "HISPANIC OR LATINO", "HISPANIC OR LATINO", "NOT HISPANIC OR LATINO"
$ ARMCD <chr> "Pbo", "Pbo", "Xan_Hi"
$ ARM <chr> "Placebo", "Placebo", "Xanomeline High Dose"
$ ACTARMCD <chr> "Pbo", "Pbo", "Xan_Hi"
$ ACTARM <chr> "Placebo", "Placebo", "Xanomeline High Dose"
$ COUNTRY <chr> "USA", "USA", "USA"
$ DMDTC <chr> "2013-12-26", "2012-07-22", "2013-07-11"
$ DMDY <dbl> -7, -14, -8
$ TRT01P <chr> "Placebo", "Placebo", "Xanomeline High Dose"
$ TRT01A <chr> "Placebo", "Placebo", "Xanomeline High Dose"
$ TRTSDTM <dttm> 2014-01-02, 2012-08-05, 2013-07-19
$ TRTSTMF <chr> "H", "H", "H"
$ TRTEDTM <dttm> 2014-07-02 23:59:59, 2012-09-01 23:59:59, 2014-01-14 23:59:59
$ TRTETMF <chr> "H", "H", "H"
$ TRTSDT <date> 2014-01-02, 2012-08-05, 2013-07-19
$ TRTEDT <date> 2014-07-02, 2012-09-01, 2014-01-14
$ TRTDURD <dbl> 182, 28, 180
$ SCRFDT <date> NA, NA, NA
$ EOSDT <date> 2014-07-02, 2012-09-02, 2014-01-14
$ EOSSTT <chr> "COMPLETED", "DISCONTINUED", "COMPLETED"
$ FRVDT <date> NA, 2013-02-18, NA
$ RANDDT <date> 2014-01-02, 2012-08-05, 2013-07-19
$ DTHDT <date> NA, NA, NA
$ DTHDTF <chr> NA, NA, NA
$ DTHADY <dbl> NA, NA, NA
$ LDDTHELD <dbl> NA, NA, NA
$ DTHCAUS <chr> NA, NA, NA
$ DTHDOM <chr> NA, NA, NA
$ DTHCGR1 <chr> NA, NA, NA
$ LSTALVDT <date> 2014-07-02, 2012-09-02, 2014-01-14
$ SAFFL <chr> "Y", "Y", "Y"
$ RACEGR1 <chr> "White", "White", "White"
$ AGEGR1 <chr> "18-64", "18-64", ">64"
$ REGION1 <chr> "NA", "NA", "NA"
$ LDDTHGR1 <chr> NA, NA, NA
$ DTH30FL <chr> NA, NA, NA
$ DTHA30FL <chr> NA, NA, NA
$ DTHB30FL <chr> NA, NA, NA
Result:
NULL
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- Log Output File -
--------------------------------------------------------------------------------
Log name: adsl.log
Log path: /cloud/project/data-raw/adsl