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- logrx Metadata -
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This log was generated using logrx 0.3.2.9000
logrx package version: 0.3.2.9000
logrx build: local
logrx link to repository: https://github.com/pharmaverse/logrx
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- User and File Information -
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User: r590548
File Name: ex2_tidylog_adsl.R
File Path: /cloud/project/data-raw/tidylog
File HashSum: 6a57fbe7ae218950d534034dd2847816845c6f5e
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- Session Information -
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─ Session info ─────────────────────────────────────────────────────────────────
setting value
version R version 4.2.3 (2023-03-15)
os Ubuntu 20.04.6 LTS
system x86_64, linux-gnu
ui RStudio
language (EN)
collate C.UTF-8
ctype C.UTF-8
tz UTC
date 2025-05-01
rstudio 2024.04.2+764.pro1 Chocolate Cosmos (server)
pandoc 3.1.11 @ /usr/lib/rstudio-server/bin/quarto/bin/tools/x86_64/ (via
rmarkdown)
quarto 1.7.29 @ /usr/bin/quarto
─ Packages ─────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
admiral * 1.2.0 2025-01-15 [1] RSPM (R 4.2.0)
admiraldev 1.2.0 2025-01-15 [1] RSPM (R 4.2.0)
callr 3.7.6 2024-03-25 [1] RSPM (R 4.2.0)
cli 3.6.4 2025-02-13 [1] RSPM (R 4.2.0)
clisymbols 1.2.0 2017-05-21 [1] RSPM (R 4.2.0)
desc 1.4.3 2023-12-10 [1] RSPM (R 4.2.0)
digest 0.6.37 2024-08-19 [1] RSPM (R 4.2.0)
dplyr * 1.1.4 2023-11-17 [1] RSPM (R 4.2.0)
evaluate 1.0.3 2025-01-10 [1] RSPM (R 4.2.0)
fastmap 1.2.0 2024-05-15 [1] RSPM (R 4.2.0)
fs 1.6.5 2024-10-30 [1] RSPM (R 4.2.0)
generics 0.1.3 2022-07-05 [1] RSPM (R 4.2.0)
glue 1.8.0 2024-09-30 [1] RSPM (R 4.2.0)
hms 1.1.3 2023-03-21 [1] RSPM (R 4.2.0)
htmltools 0.5.8.1 2024-04-04 [1] RSPM (R 4.2.0)
knitr 1.49 2024-11-08 [1] RSPM (R 4.2.0)
lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.2.0)
logrx 0.3.2.9000 2025-04-30 [1] local
lubridate * 1.9.4 2024-12-08 [1] RSPM (R 4.2.0)
magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.2.0)
pharmaversesdtm * 1.2.0 2025-01-23 [1] RSPM (R 4.2.0)
pillar 1.10.1 2025-01-07 [1] RSPM (R 4.2.0)
pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0)
pkgdown 2.1.1 2024-09-17 [1] RSPM (R 4.2.0)
processx 3.8.6 2025-02-21 [1] RSPM (R 4.2.0)
ps 1.9.0 2025-02-18 [1] RSPM (R 4.2.0)
purrr 1.0.4 2025-02-05 [1] RSPM (R 4.2.0)
R6 2.6.1 2025-02-15 [1] RSPM (R 4.2.0)
renv 1.1.4 2025-03-20 [1] RSPM (R 4.2.0)
rlang 1.1.5 2025-01-17 [1] RSPM (R 4.2.0)
rmarkdown 2.29 2024-11-04 [1] RSPM (R 4.2.0)
rstudioapi 0.17.1 2024-10-22 [1] RSPM (R 4.2.0)
sessioninfo 1.2.3 2025-02-05 [1] RSPM (R 4.2.0)
stringi 1.8.4 2024-05-06 [1] RSPM (R 4.2.0)
stringr * 1.5.1 2023-11-14 [1] RSPM (R 4.2.0)
tibble 3.2.1 2023-03-20 [1] RSPM (R 4.2.0)
tidylog * 1.1.0 2024-05-08 [1] RSPM (R 4.2.0)
tidyr 1.3.1 2024-01-24 [1] RSPM (R 4.2.0)
tidyselect 1.2.1 2024-03-11 [1] RSPM (R 4.2.0)
timechange 0.3.0 2024-01-18 [1] RSPM (R 4.2.0)
vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.2.0)
withr 3.0.2 2024-10-28 [1] RSPM (R 4.2.0)
xfun 0.51 2025-02-19 [1] RSPM (R 4.2.0)
yaml 2.3.10 2024-07-26 [1] RSPM (R 4.2.0)
[1] /cloud/lib/x86_64-pc-linux-gnu-library/4.2
[2] /opt/R/4.2.3/lib/R/library
* ── Packages attached to the search path.
─ External software ────────────────────────────────────────────────────────────
setting value
cairo 1.16.0
cairoFT
pango 1.44.7
png 1.6.37
jpeg 8.0
tiff LIBTIFF, Version 4.1.0
tcl 8.6.10
curl 7.68.0
zlib 1.2.11
bzlib 1.0.8, 13-Jul-2019
xz 5.2.4
PCRE 10.34 2019-11-21
ICU 66.1
TRE TRE 0.8.0 R_fixes (BSD)
iconv glibc 2.31
readline 8.0
BLAS /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
lapack /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
lapack_version 3.9.0
─ Python configuration ─────────────────────────────────────────────────────────
Python is not available
────────────────────────────────────────────────────────────────────────────────
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- Masked Functions -
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function `plot` from {package:base} by package:graphics
function `body<-` from {package:base} by package:methods
function `kronecker` from {package:base} by package:methods
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- Used Package and Functions -
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{package:admiral} convert_blanks_to_na, derive_vars_dtm, derive_vars_merged, exprs, derive_vars_dtm_to_dt, derive_var_trtdurd, derive_vars_dt, derive_vars_duration, derive_vars_extreme_event, event, convert_dtc_to_dt, derive_var_merged_exist_flag
{package:base} library, c, %in%, is.na, list, grepl, file.exists, dir.create, save, file.path
{package:dplyr} case_when, between, if_else
{package:stringr} %>%, str_detect
{package:tidylog} mutate
{package:tools} R_user_dir
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- Program Run Time Information -
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Start time: 2025-05-01 16:31:17 UTC
End time: 2025-05-01 16:31:21 UTC
Run time: 4 seconds
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- Errors and Warnings -
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Errors:
Warnings:
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- Messages, Output, and Result -
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Messages:
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’: filter, lag
The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union
Attaching package: ‘lubridate’
The following objects are masked from ‘package:base’: date, intersect, setdiff, union
Attaching package: ‘tidylog’
The following objects are masked from ‘package:dplyr’: add_count, add_tally, anti_join, count, distinct, distinct_all, distinct_at, distinct_if, filter, filter_all, filter_at, filter_if, full_join, group_by, group_by_all, group_by_at, group_by_if, inner_join, left_join, mutate, mutate_all, mutate_at, mutate_if, relocate, rename, rename_all, rename_at, rename_if, rename_with, right_join, sample_frac, sample_n, select, select_all, select_at, select_if, semi_join, slice, slice_head, slice_max, slice_min, slice_sample, slice_tail, summarise, summarise_all, summarise_at, summarise_if, summarize, summarize_all, summarize_at, summarize_if, tally, top_frac, top_n, transmute, transmute_all, transmute_at, transmute_if, ungroup
The following object is masked from ‘package:stats’: filter
mutate: new variable 'TRT01P' (character) with 4 unique values and 0% NA
new variable 'TRT01A' (character) with 4 unique values and 0% NA
mutate: new variable 'DTHCGR1' (character) with 2 unique values and 99% NA
mutate: dropped one variable (DOMAIN)
mutate: new variable 'RACEGR1' (character) with 2 unique values and 0% NA
new variable 'AGEGR1' (character) with 2 unique values and 0% NA
new variable 'REGION1' (character) with one unique value and 0% NA
new variable 'LDDTHGR1' (character) with 2 unique values and 99% NA
new variable 'DTH30FL' (character) with 2 unique values and 99% NA
new variable 'DTHA30FL' (character) with one unique value and 100% NA
new variable 'DTHB30FL' (character) with 2 unique values and >99% NA
Output:
Result:
NULL
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- Log Output File -
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Log name: ex2_tidylog_adsl.log
Log path: /cloud/project/data-raw/tidylog