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- logrx Metadata -
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This log was generated using logrx 0.3.2.9000
logrx package version: 0.3.2.9000
logrx build: local
logrx link to repository: https://github.com/pharmaverse/logrx
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- User and File Information -
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User: r590548
File Name: risk_diff.R
File Path: /cloud/project/data-raw/risk_diff
File HashSum: b8a2fe9d71b3515b8d39a065389d0bcfa87bee51
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- Session Information -
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─ Session info ─────────────────────────────────────────────────────────────────
setting value
version R version 4.2.3 (2023-03-15)
os Ubuntu 20.04.6 LTS
system x86_64, linux-gnu
ui RStudio
language (EN)
collate C.UTF-8
ctype C.UTF-8
tz UTC
date 2025-04-30
rstudio 2024.04.2+764.pro1 Chocolate Cosmos (server)
pandoc NA
quarto 1.6.42 @ /usr/bin/quarto
─ Packages ─────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
admiral * 1.2.0 2025-01-15 [1] RSPM (R 4.2.0)
admiraldev 1.2.0 2025-01-15 [1] RSPM (R 4.2.0)
assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.2.0)
cli 3.6.4 2025-02-13 [1] RSPM (R 4.2.0)
digest 0.6.37 2024-08-19 [1] RSPM (R 4.2.0)
dplyr * 1.1.4 2023-11-17 [1] RSPM (R 4.2.0)
forcats 1.0.0 2023-01-29 [1] RSPM (R 4.2.0)
generics 0.1.3 2022-07-05 [1] RSPM (R 4.2.0)
glue 1.8.0 2024-09-30 [1] RSPM (R 4.2.0)
haven * 2.5.4 2023-11-30 [1] RSPM (R 4.2.0)
hms 1.1.3 2023-03-21 [1] RSPM (R 4.2.0)
lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.2.0)
logrx 0.3.2.9000 2025-04-30 [1] local
lubridate * 1.9.4 2024-12-08 [1] RSPM (R 4.2.0)
magrittr * 2.0.3 2022-03-30 [1] RSPM (R 4.2.0)
pharmaversesdtm * 1.2.0 2025-01-23 [1] RSPM (R 4.2.0)
pillar 1.10.1 2025-01-07 [1] RSPM (R 4.2.0)
pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0)
purrr 1.0.4 2025-02-05 [1] RSPM (R 4.2.0)
R6 2.6.1 2025-02-15 [1] RSPM (R 4.2.0)
readr 2.1.5 2024-01-10 [1] RSPM (R 4.2.0)
rlang 1.1.5 2025-01-17 [1] RSPM (R 4.2.0)
rstudioapi 0.17.1 2024-10-22 [1] RSPM (R 4.2.0)
sessioninfo 1.2.3 2025-02-05 [1] RSPM (R 4.2.0)
stringi 1.8.4 2024-05-06 [1] RSPM (R 4.2.0)
stringr * 1.5.1 2023-11-14 [1] RSPM (R 4.2.0)
tibble 3.2.1 2023-03-20 [1] RSPM (R 4.2.0)
tidyr 1.3.1 2024-01-24 [1] RSPM (R 4.2.0)
tidyselect 1.2.1 2024-03-11 [1] RSPM (R 4.2.0)
timechange 0.3.0 2024-01-18 [1] RSPM (R 4.2.0)
Tplyr * 1.2.1 2024-02-20 [1] RSPM (R 4.2.0)
tzdb 0.4.0 2023-05-12 [1] RSPM (R 4.2.0)
vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.2.0)
withr 3.0.2 2024-10-28 [1] RSPM (R 4.2.0)
[1] /cloud/lib/x86_64-pc-linux-gnu-library/4.2
[2] /opt/R/4.2.3/lib/R/library
* ── Packages attached to the search path.
─ External software ────────────────────────────────────────────────────────────
setting value
cairo 1.16.0
cairoFT
pango 1.44.7
png 1.6.37
jpeg 8.0
tiff LIBTIFF, Version 4.1.0
tcl 8.6.10
curl 7.68.0
zlib 1.2.11
bzlib 1.0.8, 13-Jul-2019
xz 5.2.4
PCRE 10.34 2019-11-21
ICU 66.1
TRE TRE 0.8.0 R_fixes (BSD)
iconv glibc 2.31
readline 8.0
BLAS /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
lapack /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
lapack_version 3.9.0
─ Python configuration ─────────────────────────────────────────────────────────
Python is not available
────────────────────────────────────────────────────────────────────────────────
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- Masked Functions -
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function `%>%` from {package:magrittr, package:stringr, package:dplyr, package:admiral} by package:Tplyr
function `intersect` from {package:dplyr, package:base} by package:lubridate
function `setdiff` from {package:dplyr, package:base} by package:lubridate
function `union` from {package:dplyr, package:base} by package:lubridate
function `Arith` from {package:methods} by package:lubridate
function `Compare` from {package:methods} by package:lubridate
function `show` from {package:methods} by package:lubridate
function `as.difftime` from {package:base} by package:lubridate
function `date` from {package:base} by package:lubridate
function `desc` from {package:admiral} by package:dplyr
function `filter` from {package:stats} by package:dplyr
function `lag` from {package:stats} by package:dplyr
function `setequal` from {package:base} by package:dplyr
function `ts` from {package:stats} by package:pharmaversesdtm
function `cm` from {package:grDevices} by package:pharmaversesdtm
function `plot` from {package:base} by package:graphics
function `body<-` from {package:base} by package:methods
function `kronecker` from {package:base} by package:methods
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- Used Package and Functions -
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{package:Tplyr} tplyr_table, %>%, add_layer, group_count, set_distinct_by, add_risk_diff, build
{package:base} library, c
{package:haven} read_xpt
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- Program Run Time Information -
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Start time: 2025-04-30 15:20:42 UTC
End time: 2025-04-30 15:20:43 UTC
Run time: 1 seconds
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- Errors and Warnings -
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Errors:
Warnings:
Chi-squared approximation may be incorrect
Chi-squared approximation may be incorrect
Chi-squared approximation may be incorrect
Chi-squared approximation may be incorrect
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- Messages, Output, and Result -
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Messages:
Output:
Result:
# A tibble: 3 × 8
row_label1 var1_Placebo var1_Xanomeline High…¹ var1_Xanomeline Low …² ord_layer_index
<chr> <chr> <chr> <chr> <int>
1 AMERICAN INDIAN OR ALA… " 0 ( 0.0… " 1 ( 1.3%)" " 0 ( 0.0%)" 1
2 BLACK OR AFRICAN AMERI… " 6 ( 8.7… " 8 ( 10.1%)" " 4 ( 5.2%)" 1
3 WHITE " 63 ( 91.3… " 70 ( 88.6%)" " 73 ( 94.8%)" 1
# ℹ abbreviated names: ¹`var1_Xanomeline High Dose`, ²`var1_Xanomeline Low Dose`
# ℹ 3 more variables: `rdiff_Xanomeline High Dose_Placebo` <chr>,
# `rdiff_Xanomeline Low Dose_Placebo` <chr>, ord_layer_1 <dbl>
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- Log Output File -
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Log name: risk_diff.log
Log path: /cloud/project/data-raw/risk_diff