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- logrx Metadata -
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This log was generated using logrx 0.1.1.9002
logrx package version: 0.1.1.9002
logrx build: load_all()
logrx link to repository: https://github.com/pharmaverse/logrx
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- User and File Information -
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User: r590548
File Name: risk_diff.R
File Path: /cloud/project/data-raw/risk_diff
File HashSum: 8befccfaf92d2bbed15432aa39303043f7eb8209
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- Session Information -
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─ Session info ─────────────────────────────────────────────────────────────────
setting value
version R version 4.2.2 (2022-10-31)
os Ubuntu 20.04.5 LTS
system x86_64, linux-gnu
ui RStudio
language (EN)
collate C.UTF-8
ctype C.UTF-8
tz UTC
date 2022-12-13
rstudio 2022.07.2+576.pro12 Spotted Wakerobin (server)
pandoc 2.19.2 @ /usr/lib/rstudio-server/bin/quarto/bin/tools/ (via rmarkdown)
─ Packages ─────────────────────────────────────────────────────────────────────
! package * version date (UTC) lib source
assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.2.0)
bslib 0.4.0 2022-07-16 [1] RSPM (R 4.2.0)
cachem 1.0.6 2021-08-19 [1] RSPM (R 4.2.0)
callr 3.7.2 2022-08-22 [1] RSPM (R 4.2.0)
cli 3.4.1 2022-09-23 [1] RSPM (R 4.2.0)
commonmark 1.8.0 2022-03-09 [1] RSPM (R 4.2.0)
crayon 1.5.1 2022-03-26 [1] RSPM (R 4.2.0)
cyclocomp 1.1.0 2016-09-10 [1] RSPM (R 4.2.0)
desc 1.4.2 2022-09-08 [1] RSPM (R 4.2.0)
devtools 2.4.4 2022-07-20 [1] RSPM (R 4.2.0)
digest 0.6.29 2021-12-01 [1] RSPM (R 4.2.0)
dplyr 1.0.10 2022-09-01 [1] RSPM (R 4.2.0)
ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.2.0)
evaluate 0.16 2022-08-09 [1] RSPM (R 4.2.0)
fansi 1.0.3 2022-03-24 [1] RSPM (R 4.2.0)
fastmap 1.1.0 2021-01-25 [1] RSPM (R 4.2.0)
forcats 0.5.2 2022-08-19 [1] RSPM (R 4.2.0)
fs 1.5.2 2021-12-08 [1] RSPM (R 4.2.0)
generics 0.1.3 2022-07-05 [1] RSPM (R 4.2.0)
glue 1.6.2 2022-02-24 [1] RSPM (R 4.2.0)
haven * 2.5.1 2022-08-22 [1] RSPM (R 4.2.0)
hms 1.1.2 2022-08-19 [1] RSPM (R 4.2.0)
htmltools 0.5.3 2022-07-18 [1] RSPM (R 4.2.0)
htmlwidgets 1.5.4 2021-09-08 [1] RSPM (R 4.2.0)
httpuv 1.6.6 2022-09-08 [1] RSPM (R 4.2.0)
jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.2.0)
jsonlite 1.8.0 2022-02-22 [1] RSPM (R 4.2.0)
knitr 1.40 2022-08-24 [1] RSPM (R 4.2.0)
later 1.3.0 2021-08-18 [1] RSPM (R 4.2.0)
lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.2.0)
lifecycle 1.0.2 2022-09-09 [1] RSPM (R 4.2.0)
lintr 3.0.1 2022-09-13 [1] RSPM (R 4.2.0)
P logrx * 0.1.1.9002 2022-12-08 [?] load_all()
magrittr * 2.0.3 2022-03-30 [1] RSPM (R 4.2.0)
memoise 2.0.1 2021-11-26 [1] RSPM (R 4.2.0)
mime 0.12 2021-09-28 [1] RSPM (R 4.2.0)
miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.2.0)
pillar 1.8.1 2022-08-19 [1] RSPM (R 4.2.0)
pkgbuild 1.3.1 2021-12-20 [1] RSPM (R 4.2.0)
pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0)
pkgdown 2.0.6 2022-07-16 [1] RSPM (R 4.2.0)
pkgload 1.3.0 2022-06-27 [1] RSPM (R 4.2.0)
prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0)
processx 3.7.0 2022-07-07 [1] RSPM (R 4.2.0)
profvis 0.3.7 2020-11-02 [1] RSPM (R 4.2.0)
promises 1.2.0.1 2021-02-11 [1] RSPM (R 4.2.0)
ps 1.7.1 2022-06-18 [1] RSPM (R 4.2.0)
purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0)
R6 2.5.1 2021-08-19 [1] RSPM (R 4.2.0)
Rcpp 1.0.9 2022-07-08 [1] RSPM (R 4.2.0)
readr 2.1.2 2022-01-30 [1] RSPM (R 4.2.0)
remotes 2.4.2 2021-11-30 [1] RSPM (R 4.2.0)
rex 1.2.1 2021-11-26 [1] RSPM (R 4.2.0)
rlang 1.0.6 2022-09-24 [1] RSPM (R 4.2.0)
rmarkdown 2.16 2022-08-24 [1] RSPM (R 4.2.0)
roxygen2 7.2.1 2022-07-18 [1] RSPM (R 4.2.0)
rprojroot 2.0.3 2022-04-02 [1] RSPM (R 4.2.0)
rstudioapi 0.14 2022-08-22 [1] RSPM (R 4.2.0)
sass 0.4.2 2022-07-16 [1] RSPM (R 4.2.0)
sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.2.0)
shiny * 1.7.2 2022-07-19 [1] RSPM (R 4.2.0)
stringi 1.7.8 2022-07-11 [1] RSPM (R 4.2.0)
stringr 1.4.1 2022-08-20 [1] RSPM (R 4.2.0)
tibble 3.1.8 2022-07-22 [1] RSPM (R 4.2.0)
tidyr 1.2.1 2022-09-08 [1] RSPM (R 4.2.0)
tidyselect 1.1.2 2022-02-21 [1] RSPM (R 4.2.0)
Tplyr * 0.4.4 2022-01-27 [1] RSPM (R 4.2.0)
tzdb 0.3.0 2022-03-28 [1] RSPM (R 4.2.0)
urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.2.0)
usethis 2.1.6 2022-05-25 [1] RSPM (R 4.2.0)
utf8 1.2.2 2021-07-24 [1] RSPM (R 4.2.0)
vctrs 0.4.1 2022-04-13 [1] RSPM (R 4.2.0)
waiter 0.2.5 2022-01-03 [1] RSPM (R 4.2.0)
withr 2.5.0 2022-03-03 [1] RSPM (R 4.2.0)
xfun 0.33 2022-09-12 [1] RSPM (R 4.2.0)
xml2 1.3.3 2021-11-30 [1] RSPM (R 4.2.0)
xtable 1.8-4 2019-04-21 [1] RSPM (R 4.2.0)
yaml 2.3.5 2022-02-21 [1] RSPM (R 4.2.0)
[1] /cloud/lib/x86_64-pc-linux-gnu-library/4.2
[2] /opt/R/4.2.2/lib/R/library
P ── Loaded and on-disk path mismatch.
─ External software ────────────────────────────────────────────────────────────
setting value
cairo 1.16.0
cairoFT
pango 1.44.7
png 1.6.37
jpeg 8.0
tiff LIBTIFF, Version 4.1.0
tcl 8.6.10
curl 7.68.0
zlib 1.2.11
bzlib 1.0.8, 13-Jul-2019
xz 5.2.4
PCRE 10.34 2019-11-21
ICU 66.1
TRE TRE 0.8.0 R_fixes (BSD)
iconv glibc 2.31
readline 8.0
BLAS /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3
lapack /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3
lapack_version 3.9.0
─ Python configuration ─────────────────────────────────────────────────────────
Python is not available
────────────────────────────────────────────────────────────────────────────────
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- Masked Functions -
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function `actionButton` from {package:logrx} by package:shiny
function `checkboxInput` from {package:logrx} by package:shiny
function `column` from {package:logrx} by package:shiny
function `fluidRow` from {package:logrx} by package:shiny
function `HTML` from {package:logrx} by package:shiny
function `observeEvent` from {package:logrx} by package:shiny
function `reactiveValues` from {package:logrx} by package:shiny
function `renderText` from {package:logrx} by package:shiny
function `runGadget` from {package:logrx} by package:shiny
function `stopApp` from {package:logrx} by package:shiny
function `tags` from {package:logrx} by package:shiny
function `textInput` from {package:logrx} by package:shiny
function `uiOutput` from {package:logrx} by package:shiny
function `system.file` from {package:logrx, package:base} by devtools_shims
function `?` from {package:utils} by devtools_shims
function `help` from {package:utils} by devtools_shims
function `aggregate` from {package:stats} by package:logrx
function `filter` from {package:stats} by package:logrx
function `capture.output` from {package:utils} by package:logrx
function `getParseData` from {package:utils} by package:logrx
function `library.dynam` from {package:base} by package:logrx
function `library.dynam.unload` from {package:base} by package:logrx
function `plot` from {package:base} by package:graphics
function `body<-` from {package:base} by package:methods
function `kronecker` from {package:base} by package:methods
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- Used Package and Functions -
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{package:base} library, c
{package:haven} read_xpt
{package:magrittr} %>%
{package:Tplyr} tplyr_table, add_layer, group_count, set_distinct_by, add_risk_diff, build
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- Program Run Time Information -
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Start time: 2022-12-13 20:38:06 UTC
End time: 2022-12-13 20:38:07 UTC
Run time: 1 seconds
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- Errors and Warnings -
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Errors:
Warnings:
Chi-squared approximation may be incorrect
Chi-squared approximation may be incorrect
Chi-squared approximation may be incorrect
Chi-squared approximation may be incorrect
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- Messages, Output, and Result -
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Messages:
Attaching package: ‘magrittr’
The following object is masked from ‘package:logrx’: set_names
Output:
Result:
# A tibble: 3 × 8
row_label1 var1_Placebo var1_Xanomel…¹ var1_…² ord_l…³ rdiff…⁴ rdiff…⁵ ord_l…⁶
<chr> <chr> <chr> <chr> <int> <chr> <chr> <dbl>
1 AMERICAN INDIAN OR ALASKA NATIVE " 0 ( 0.0%)" " 1 ( 1.3%)" " 0 (… 1 " 0.01… " 0.00… 1
2 BLACK OR AFRICAN AMERICAN " 6 ( 8.7%)" " 8 ( 10.1%)" " 4 (… 1 " 0.01… "-0.03… 2
3 WHITE " 63 ( 91.3%)" " 70 ( 88.6%)" " 73 (… 1 "-0.02… " 0.03… 3
# … with abbreviated variable names ¹`var1_Xanomeline High Dose`, ²`var1_Xanomeline Low Dose`,
# ³ord_layer_index, ⁴`rdiff_Xanomeline High Dose_Placebo`, ⁵`rdiff_Xanomeline Low Dose_Placebo`,
# ⁶ord_layer_1
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- Log Output File -
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Log name: risk_diff.log
Log path: /cloud/project/data-raw/risk_diff