Using the grouping from either the decode_var or code_var and a reference
variable (ref_var) it will create a categorical variable and the numeric
version of that categorical variable.
Arguments
- data
Dataset with reference variable in it
- metacore
A metacore object to get the codelist from. If the variable has different codelists for different datasets the metacore object will need to be subsetted using
select_datasetfrom the metacore package.- ref_var
Name of variable to be used as the reference i.e AGE when creating AGEGR1
- grp_var
Name of the new grouped variable
- num_grp_var
Name of the new numeric decode for the grouped variable. This is optional if no value given no variable will be created
Examples
library(metacore)
library(haven)
library(dplyr)
load(metacore_example("pilot_ADaM.rda"))
spec <- metacore %>% select_dataset("ADSL")
dm <- read_xpt(metatools_example("dm.xpt")) %>%
select(USUBJID, AGE)
# Grouping Column Only
create_cat_var(dm, spec, AGE, AGEGR1)
#> # A tibble: 306 × 3
#> USUBJID AGE AGEGR1
#> <chr> <dbl> <chr>
#> 1 01-701-1015 63 <65
#> 2 01-701-1023 64 <65
#> 3 01-701-1028 71 65-80
#> 4 01-701-1033 74 65-80
#> 5 01-701-1034 77 65-80
#> 6 01-701-1047 85 >80
#> 7 01-701-1057 59 <65
#> 8 01-701-1097 68 65-80
#> 9 01-701-1111 81 >80
#> 10 01-701-1115 84 >80
#> # ℹ 296 more rows
# Grouping Column and Numeric Decode
create_cat_var(dm, spec, AGE, AGEGR1, AGEGR1N)
#> # A tibble: 306 × 4
#> USUBJID AGE AGEGR1 AGEGR1N
#> <chr> <dbl> <chr> <dbl>
#> 1 01-701-1015 63 <65 1
#> 2 01-701-1023 64 <65 1
#> 3 01-701-1028 71 65-80 2
#> 4 01-701-1033 74 65-80 2
#> 5 01-701-1034 77 65-80 2
#> 6 01-701-1047 85 >80 3
#> 7 01-701-1057 59 <65 1
#> 8 01-701-1097 68 65-80 2
#> 9 01-701-1111 81 >80 3
#> 10 01-701-1115 84 >80 3
#> # ℹ 296 more rows