Make Supplemental Qualifier

Usage

make_supp_qual(dataset, metacore, dataset_name = deprecated())

Arguments

dataset: dataset the supp will be pulled from
metacore: A subsetted metacore object to get the supp information from. If not already subsetted then a dataset_name will need to be provided
dataset_name: Optional string to specify the dataset that is being built. This is only needed if the metacore object provided hasn't already been subsetted.
Note: Deprecated in version 0.2.0. The dataset_name argument will be removed in a future release. Please use metacore::select_dataset to subset the metacore object to obtain metadata for a single dataset.

Value

a CDISC formatted SUPP dataset

Examples


library(metacore)
library(safetyData)
library(tibble)
load(metacore_example("pilot_SDTM.rda"))
spec <- metacore %>% select_dataset("AE")
#> Warning: `core` from the `ds_vars` table only contains missing values.
#> Warning: `format` from the `var_spec` table only contains missing values.
#> Warning: `common` from the `var_spec` table only contains missing values.
#> Warning: `sig_dig` from the `value_spec` table only contains missing values.
#> Warning: `where` from the `value_spec` table only contains missing values.
#> ✔ AE dataset successfully selected
#> 
ae <- combine_supp(sdtm_ae, sdtm_suppae)
make_supp_qual(ae, spec) %>% as_tibble()
#> # A tibble: 1,191 × 10
#>    STUDYID      RDOMAIN USUBJID    IDVAR IDVARVAL QNAM  QLABEL QVAL  QORIG QEVAL
#>    <chr>        <chr>   <chr>      <chr>    <int> <chr> <chr>  <chr> <chr> <chr>
#>  1 CDISCPILOT01 AE      01-701-10… AESEQ        1 AETR… TREAT… Y     deri… CLIN…
#>  2 CDISCPILOT01 AE      01-701-10… AESEQ        2 AETR… TREAT… Y     deri… CLIN…
#>  3 CDISCPILOT01 AE      01-701-10… AESEQ        3 AETR… TREAT… Y     deri… CLIN…
#>  4 CDISCPILOT01 AE      01-701-10… AESEQ        1 AETR… TREAT… Y     deri… CLIN…
#>  5 CDISCPILOT01 AE      01-701-10… AESEQ        2 AETR… TREAT… Y     deri… CLIN…
#>  6 CDISCPILOT01 AE      01-701-10… AESEQ        3 AETR… TREAT… Y     deri… CLIN…
#>  7 CDISCPILOT01 AE      01-701-10… AESEQ        4 AETR… TREAT… Y     deri… CLIN…
#>  8 CDISCPILOT01 AE      01-701-10… AESEQ        1 AETR… TREAT… Y     deri… CLIN…
#>  9 CDISCPILOT01 AE      01-701-10… AESEQ        2 AETR… TREAT… Y     deri… CLIN…
#> 10 CDISCPILOT01 AE      01-701-10… AESEQ        1 AETR… TREAT… Y     deri… CLIN…
#> # ℹ 1,181 more rows