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Pre-Defined Time-to-Event Source Objects

Source: R/tte_sources.R
tte_source_objects.Rd

These pre-defined tte_source objects can be used as input to derive_param_tte().

Usage

death_event

lastalive_censor

ae_event

ae_ser_event

ae_gr1_event

ae_gr2_event

ae_gr3_event

ae_gr4_event

ae_gr5_event

ae_gr35_event

ae_sev_event

ae_wd_event

Details

To see the definition of the various objects simply print the object in the R console, e.g. print(death_event). For details of how to use these objects please refer to derive_param_tte().

See also

derive_param_tte(), tte_source(), event_source(), censor_source()

Source Objects: basket_select(), censor_source(), event(), event_joined(), event_source(), flag_event(), query(), records_source(), tte_source()

Examples

# This shows the definition of all pre-defined `tte_source` objects that ship
# with {admiral}
for (obj in list_tte_source_objects()$object) {
  cat(obj, "\n")
  print(get(obj))
  cat("\n")
}
#> ae_gr3_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y" & ATOXGR == "3"
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "GRADE 3 ADVERSE EVENT"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> ae_wd_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y" & AEACN == "DRUG WITHDRAWN"
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "ADVERSE EVENT LEADING TO DRUG WITHDRAWAL"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> ae_gr35_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y" & ATOXGR %in% c("3", "4", "5")
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "GRADE 3-5 ADVERSE EVENT"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> lastalive_censor 
#> <censor_source> object
#> dataset_name: "adsl"
#> filter: NULL
#> date: LSTALVDT
#> censor: 1
#> set_values_to:
#>   EVNTDESC: "ALIVE"
#>   SRCDOM: "ADSL"
#>   SRCVAR: "LSTALVDT"
#> 
#> ae_gr1_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y" & ATOXGR == "1"
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "GRADE 1 ADVERSE EVENT"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> ae_ser_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y" & AESER == "Y"
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "SERIOUS ADVERSE EVENT"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> ae_gr2_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y" & ATOXGR == "2"
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "GRADE 2 ADVERSE EVENT"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> ae_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y"
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "ADVERSE EVENT"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> ae_gr4_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y" & ATOXGR == "4"
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "GRADE 4 ADVERSE EVENT"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> ae_gr5_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y" & ATOXGR == "5"
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "GRADE 5 ADVERSE EVENT"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> ae_sev_event 
#> <event_source> object
#> dataset_name: "adae"
#> filter: TRTEMFL == "Y" & AESEV == "SEVERE"
#> date: ASTDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "SEVERE ADVERSE EVENT"
#>   SRCDOM: "ADAE"
#>   SRCVAR: "ASTDT"
#>   SRCSEQ: AESEQ
#> 
#> death_event 
#> <event_source> object
#> dataset_name: "adsl"
#> filter: DTHFL == "Y"
#> date: DTHDT
#> censor: 0
#> set_values_to:
#>   EVNTDESC: "DEATH"
#>   SRCDOM: "ADSL"
#>   SRCVAR: "DTHDT"
#>