Changelog • admiralonco

admiralonco 1.0.0

CRAN release: 2023-12-20

The bor_ne event object was updated such that CR and PR are additionally considered as event. This ensures that the confirmed best overall response for a patient with a single CR or PR assessment is derived as "NE" instead of "MISSING". (#253)

New vignette “Creating ADRS with iRECIST endpoints”. (#233)
All vignettes and templates were updated to be in line with the changes in admiral (see Breaking Changes for details)(#256).

The derive_*() functions were superseded in favor of derive_extreme_event(). Any superseded functions can continue to be used as demonstrated via the “Basic ADRS” vignette, as they will remain supported and won’t be deprecated in the near future. (#256)
The filter_pd() function was superseded in favor of filter_relative(). (#256)
The function call_aval_fun(), which was deprecated in admiralonco 0.4.0, has been removed. (#256)

CRAN release: 2023-09-14

Oncology specific events are provided for deriving oncology parameters with admiral::derive_extreme_event(). (#234)

The ADRS vignette and template were split into two (#234):
- A basic version which uses the admiralonco functions to cover standard RECIST 1.1.
- A more flexible version which uses admiral::derive_extreme_event(). This should be used if non-standard ADRS parameters should be implemented or non-standard response values should be considered. This version can also be used as a starting point for implementing other response criteria than RECIST 1.1, e.g., iRECIST or International Myeloma Working Group (IMWG) criteria for the diagnosis of multiple myeloma.
The ADRS vignette and template were updated such that test data from pharmaversesdtm instead of {admiral.test} is used. (#226)
The “Create ADTR” vignette and the ADTR template were updated such that test data from pharmaversesdtm instead of {admiral.test} is used. (#247)
The confirmed response derivation was fixed in the basic ADRS vignette and template. When calling derive_param_confirmed_resp() the filter_source argument has to be set to PARAMCD == "OVR" & ANL01FL == "Y" instead of PARAMCD == "OVR" & AVALC %in% c("CR", "PR") & ANL01FL == "Y". Otherwise, responses like CR, NE, NE, CR are considered as confirmed response. (#245)

CRAN release: 2023-06-12

New vignette “Creating and Using New Anti-Cancer Start Date” (#17)
“Create ADRS” and “Create ADTTE” vignette has been updated to include a link to “Creating and Using New Anti-Cancer Start Date” vignette

Added a “Report a bug” link to admiralonco website (#211)
Added a section regarding dependencies to the admiralonco website (#223)
Vignettes and templates were updated due to changes in admiral and admiralonco: (#216)
- The AVAL variable is now populated via the set_values_to argument as the aval_fun argument was deprecated.
- admiral::derive_param_extreme_event() calls were replaced by admiral::derive_extreme_records() calls due to deprecation of admiral::derive_param_extreme_event().
- admiral::derive_param_exist_flag() calls were updated as the dataset_adsl argument was renamed to dataset_ref.

Function derive_param_lasta(), which was deprecated in admiralonco 0.2.0, has been removed. (#216)
The aval_fun argument of derive_param_bor(), derive_param_clinbenefit(), derive_param_confirmed_bor(), derive_param_confirmed_resp(), derive_param_response() was deprecated in favor of the set_values_to argument. (#216)
The call_aval_fun() function was deprecated in favor or admiraldev::process_set_values_to(). (#216)

CRAN release: 2023-03-14

All function arguments which expected a list of quosures created by vars() are now expecting a list of expressions created by exprs(). For example, instead of by_vars = vars(STUDYID, USUBJID) by_vars = exprs(STUDYID, USUBJID) must be used now. (#197)

ADTTE template simplified for duration of response in line with admiral::derive_param_tte() enhancement (#203)

CRAN release: 2022-12-07

Functions that use subject_keys as a function argument now default to get_admiral_option("subject_keys")instead of vars(STUDYID, USUBJID) to allow users to change the variables that uniquely identify a subject once using set_admiral_options() to avoid several instances of find + replace in a script. (#175)

Function derive_param_lasta() has been deprecated. Please use admiral::derive_param_extreme_event() instead (#89).

Showed alternative approach in ADRS vignette for filtering out assessments after progressive disease compared to source_pd argument (#168)
Extra terminology added for Independent Review Facility (IRF) as Blinded Independent Central Review (BICR) to make vignettes more accessible (#187)

CRAN release: 2022-09-13