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Changelog

Source: NEWS.md

admiralonco 1.1.0

Documentation

  • New vignette “Creating ADRS with IMWG Criteria”. (#277)

Updates of Existing Functions

  • Replaced hard coding of exprs(USUBJID, STUDYID) and exprs(USUBJID) with get_admiral_option("subject_keys") so the argument is flexible and can be changed from the default by the user. (#281)

admiralonco 1.0.0

CRAN release: 2023-12-20

Updates of Existing Functions

  • The bor_ne event object was updated such that CR and PR are additionally considered as event. This ensures that the confirmed best overall response for a patient with a single CR or PR assessment is derived as "NE" instead of "MISSING". (#253)

Documentation

  • New vignette “Creating ADRS with iRECIST endpoints”. (#233)

  • All vignettes and templates were updated to be in line with the changes in admiral (see Breaking Changes for details)(#256).

Breaking Changes

  • The derive_*() functions were superseded in favor of derive_extreme_event(). Any superseded functions can continue to be used as demonstrated via the “Basic ADRS” vignette, as they will remain supported and won’t be deprecated in the near future. (#256)

  • The filter_pd() function was superseded in favor of filter_relative(). (#256)

  • The function call_aval_fun(), which was deprecated in admiralonco 0.4.0, has been removed. (#256)

Various

  • Website now has button/links to Slack channel and GitHub Issues. (#262)

admiralonco 0.5.0

CRAN release: 2023-09-14

New Features

Documentation

  • The ADRS vignette and template were split into two (#234):

    • A basic version which uses the admiralonco functions to cover standard RECIST 1.1.
    • A more flexible version which uses admiral::derive_extreme_event(). This should be used if non-standard ADRS parameters should be implemented or non-standard response values should be considered. This version can also be used as a starting point for implementing other response criteria than RECIST 1.1, e.g., iRECIST or International Myeloma Working Group (IMWG) criteria for the diagnosis of multiple myeloma.

  • The ADRS vignette and template were updated such that test data from pharmaversesdtm instead of {admiral.test} is used. (#226)

  • The “Create ADTR” vignette and the ADTR template were updated such that test data from pharmaversesdtm instead of {admiral.test} is used. (#247)

  • The confirmed response derivation was fixed in the basic ADRS vignette and template. When calling derive_param_confirmed_resp() the filter_source argument has to be set to PARAMCD == "OVR" & ANL01FL == "Y" instead of PARAMCD == "OVR" & AVALC %in% c("CR", "PR") & ANL01FL == "Y". Otherwise, responses like CR, NE, NE, CR are considered as confirmed response. (#245)

admiralonco 0.4.0

CRAN release: 2023-06-12

Documentation

  • New vignette “Creating and Using New Anti-Cancer Start Date” (#17)
  • “Create ADRS” and “Create ADTTE” vignette has been updated to include a link to “Creating and Using New Anti-Cancer Start Date” vignette

New Features

  • Added a “Report a bug” link to admiralonco website (#211)

  • Added a section regarding dependencies to the admiralonco website (#223)

  • Vignettes and templates were updated due to changes in admiral and admiralonco: (#216)

    • The AVAL variable is now populated via the set_values_to argument as the aval_fun argument was deprecated.
    • admiral::derive_param_extreme_event() calls were replaced by admiral::derive_extreme_records() calls due to deprecation of admiral::derive_param_extreme_event().
    • admiral::derive_param_exist_flag() calls were updated as the dataset_adsl argument was renamed to dataset_ref.

Breaking Changes

admiralonco 0.3.0

CRAN release: 2023-03-14

Breaking Changes

  • All function arguments which expected a list of quosures created by vars() are now expecting a list of expressions created by exprs(). For example, instead of by_vars = vars(STUDYID, USUBJID) by_vars = exprs(STUDYID, USUBJID) must be used now. (#197)

Documentation

  • New vignette “Create ADTR” (#16)

Various

admiralonco 0.2.0

CRAN release: 2022-12-07

Updates of Existing Functions

  • Functions that use subject_keys as a function argument now default to get_admiral_option("subject_keys")instead of vars(STUDYID, USUBJID) to allow users to change the variables that uniquely identify a subject once using set_admiral_options() to avoid several instances of find + replace in a script. (#175)

Breaking Changes

  • Function derive_param_lasta() has been deprecated. Please use admiral::derive_param_extreme_event() instead (#89).

Documentation

  • Showed alternative approach in ADRS vignette for filtering out assessments after progressive disease compared to source_pd argument (#168)
  • Extra terminology added for Independent Review Facility (IRF) as Blinded Independent Central Review (BICR) to make vignettes more accessible (#187)

Various

  • Templates now save datasets as .rds instead of .rda (#177)

admiralonco 0.1.0

CRAN release: 2022-09-13

  • Initial package release focused mainly on solid tumor / RECIST v1.1.