R version 4.4.3 (2025-02-28)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.5 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: Etc/UTC
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] htmlwidgets_1.6.4 compiler_4.4.3 fastmap_1.2.0 cli_3.6.5
[5] tools_4.4.3 htmltools_0.5.8.1 rstudioapi_0.17.1 yaml_2.3.10
[9] rmarkdown_2.29 knitr_1.50 jsonlite_2.0.0 xfun_0.52
[13] digest_0.6.37 rlang_1.1.6 evaluate_1.0.4 Session Info
Session Info
Installed Packages
| Package | Version |
|---|---|
| admiral | 1.3.1 |
| admiraldev | 1.3.1.9002 |
| admiralonco | 1.2.0 |
| admiralpeds | 0.2.0 |
| admiralroche | 1.4.0.9000 |
| archive | 1.1.12 |
| arrow | 19.0.1.1 |
| base64enc | 0.1-3 |
| bigD | 0.3.1 |
| bit | 4.6.0 |
| bit64 | 4.6.0-1 |
| bitops | 1.0-9 |
| brio | 1.1.5 |
| broom | 1.0.9 |
| bslib | 0.9.0 |
| cachem | 1.1.0 |
| callr | 3.7.6 |
| car | 3.1-3 |
| carData | 3.0-5 |
| cards | 0.6.1.9015 |
| cardx | 0.2.5.9001 |
| caTools | 1.18.3 |
| cli | 3.6.5 |
| common | 1.1.3 |
| commonmark | 2.0.0 |
| confintr | 1.0.2 |
| covr | 3.6.4 |
| cowplot | 1.2.0 |
| cpp11 | 0.5.2 |
| credentials | 2.0.2 |
| curl | 6.4.0 |
| cyclocomp | 1.1.1 |
| data.table | 1.17.8 |
| Deriv | 4.2.0 |
| devtools | 2.4.5 |
| diffdf | 1.1.1 |
| diffobj | 0.3.6 |
| diffviewer | 0.1.2 |
| digest | 0.6.37 |
| doBy | 4.7.0 |
| downlit | 0.4.4 |
| dplyr | 1.1.4 |
| ellipsis | 0.3.2 |
| emmeans | 1.11.2 |
| estimability | 1.5.1 |
| evaluate | 1.0.4 |
| farver | 2.1.2 |
| fastmap | 1.2.0 |
| filelock | 1.0.3 |
| flextable | 0.9.9 |
| fontawesome | 0.5.3 |
| fontBitstreamVera | 0.1.1 |
| fontLiberation | 0.1.0 |
| fontquiver | 0.2.1 |
| foreach | 1.5.2 |
| formatters | 0.5.11 |
| Formula | 1.2-5 |
| fs | 1.6.6 |
| gdtools | 0.4.2 |
| geeasy | 0.1.3 |
| geeM | 0.10.1 |
| geepack | 1.3.12 |
| generics | 0.1.4 |
| gert | 2.1.5 |
| ggExtra | 0.10.1 |
| ggformula | 0.12.2 |
| ggh4x | 0.3.1 |
| ggmosaic | 0.3.3 |
| ggplot2 | 3.5.2 |
| ggpmisc | 0.6.2 |
| ggpp | 0.5.9 |
| ggrepel | 0.9.6 |
| gh | 1.5.0 |
| gitcreds | 0.1.2 |
| glmnet | 4.1-10 |
| glue | 1.8.0 |
| goftest | 1.2-3 |
| gt | 1.0.0 |
| gtable | 0.3.6 |
| gtsummary | 2.3.0 |
| haven | 2.5.5 |
| here | 1.0.1 |
| highr | 0.11 |
| htmltools | 0.5.8.1 |
| htmlwidgets | 1.6.4 |
| httpuv | 1.6.16 |
| httr2 | 1.2.1 |
| hunspell | 3.0.6 |
| ini | 0.3.1 |
| iterators | 1.0.14 |
| jquerylib | 0.1.4 |
| jsonlite | 2.0.0 |
| juicyjuice | 0.1.0 |
| kableExtra | 1.4.0 |
| kinship2 | 1.9.6.1 |
| knitr | 1.50 |
| labeling | 0.4.3 |
| labelled | 2.14.1 |
| later | 1.4.2 |
| lifecycle | 1.0.4 |
| lintr | 3.2.0 |
| litedown | 0.7 |
| lme4 | 1.1-37 |
| lmodel2 | 1.7-4 |
| logger | 0.4.0 |
| logr | 1.3.9 |
| logrx | 0.4.0 |
| lpSolve | 5.6.23 |
| lubridate | 1.9.4 |
| magrittr | 2.0.3 |
| markdown | 2.0 |
| MatrixModels | 0.5-4 |
| memoise | 2.0.1 |
| MESS | 0.5.12 |
| metacore | 0.2.1 |
| metatools | 0.2.0 |
| microbenchmark | 1.5.0 |
| mime | 0.13 |
| miniUI | 0.1.2 |
| mmrm | 0.3.15 |
| mosaicCore | 0.9.5 |
| multcomp | 1.4-28 |
| multcompView | 0.1-10 |
| mvtnorm | 1.3-3 |
| nestcolor | 0.1.3 |
| nesttemplate | 0.0.0.9009 |
| nloptr | 2.2.1 |
| officer | 0.6.10 |
| openssl | 2.3.3 |
| openxlsx | 4.2.8 |
| openxlsx2 | 1.18 |
| pak | 0.9.0 |
| parallelly | 1.45.1 |
| pbkrtest | 0.5.5 |
| pharmaverseadam | 1.1.0 |
| pharmaversesdtm | 1.3.0 |
| pillar | 1.11.0 |
| pkgbuild | 1.4.8 |
| pkgcache | 2.2.4 |
| pkgconfig | 2.0.3 |
| pkgdepends | 0.9.0 |
| pkgdown | 2.1.3 |
| pkglite | 0.2.4 |
| pkgload | 1.4.0 |
| PKNCA | 0.12.0 |
| plotly | 4.11.0 |
| png | 0.1-8 |
| polynom | 1.4-1 |
| praise | 1.0.0 |
| processx | 3.8.6 |
| productplots | 0.1.1 |
| profvis | 0.4.0 |
| promises | 1.3.3 |
| ps | 1.9.1 |
| purrr | 1.1.0 |
| quadprog | 1.5-8 |
| quantreg | 6.1 |
| quarto | 1.5.0 |
| R.cache | 0.17.0 |
| R.methodsS3 | 1.8.2 |
| R.oo | 1.27.1 |
| R.utils | 2.13.0 |
| R6 | 2.6.1 |
| ragg | 1.4.0 |
| rappdirs | 0.3.3 |
| rbibutils | 2.3 |
| rcmdcheck | 1.4.0 |
| RColorBrewer | 1.1-3 |
| Rcpp | 1.1.0 |
| RcppArmadillo | 14.6.0-1 |
| RcppTOML | 0.2.3 |
| Rdpack | 2.6.4 |
| reactable | 0.4.4 |
| reactable.extras | 0.2.1 |
| reactablefmtr | 2.0.0 |
| reactR | 0.6.1 |
| readxl | 1.4.5 |
| reformulas | 0.4.1 |
| renv | 1.1.5 |
| reticulate | 1.43.0 |
| rex | 1.2.1 |
| rio | 1.2.3 |
| rjson | 0.2.23 |
| rlang | 1.1.6 |
| rlistings | 0.2.12 |
| rmarkdown | 2.29 |
| roxygen2 | 7.3.2 |
| rprojroot | 2.1.0 |
| rstudioapi | 0.17.1 |
| rtables | 0.6.13 |
| rtables.officer | 0.1.0 |
| rversions | 2.1.2 |
| S7 | 0.2.0 |
| sandwich | 3.1-1 |
| sass | 0.4.10 |
| scales | 1.4.0 |
| sessioninfo | 1.2.3 |
| shape | 1.4.6.1 |
| shiny | 1.11.1 |
| shinyBS | 0.61.1 |
| shinybusy | 0.3.3 |
| shinycssloaders | 1.1.0 |
| shinyFiles | 0.9.3 |
| shinyjqui | 0.4.1 |
| shinylive | 0.3.0 |
| shinyTree | 0.3.1 |
| shinyvalidate | 0.1.3 |
| shinyWidgets | 0.9.0 |
| sparkline | 2.0 |
| SparseM | 1.84-2 |
| spelling | 2.3.1 |
| splus2R | 1.3-5 |
| stringi | 1.8.7 |
| stringr | 1.5.1 |
| styler | 1.10.3 |
| survival | 3.8-3 |
| svglite | 2.2.1 |
| syntheticadam | 0.5.0.9001 |
| syntheticsdtm | 0.3.0 |
| systemfonts | 1.2.3 |
| teal | 0.16.0 |
| teal.code | 0.6.1 |
| teal.data | 0.7.0 |
| teal.logger | 0.4.0 |
| teal.modules.clinical | 0.10.0 |
| teal.modules.general | 0.4.1 |
| teal.reporter | 0.4.0 |
| teal.slice | 0.6.0 |
| teal.transform | 0.6.0 |
| teal.widgets | 0.4.3 |
| tern | 0.9.9 |
| tern.gee | 0.1.5 |
| tern.mmrm | 0.3.3 |
| testthat | 3.2.3 |
| textshaping | 1.0.1 |
| TH.data | 1.1-3 |
| tibble | 3.3.0 |
| tidyr | 1.3.1 |
| tidyselect | 1.2.1 |
| tinytex | 0.57 |
| tippy | 0.1.0 |
| TMB | 1.9.17 |
| tzdb | 0.5.0 |
| unglue | 0.1.0 |
| units | 0.8-7 |
| urlchecker | 1.0.1 |
| usethis | 3.1.0 |
| utf8 | 1.2.6 |
| V8 | 6.0.5 |
| vctrs | 0.6.5 |
| vdiffr | 1.0.8 |
| viridisLite | 0.4.2 |
| vistime | 1.2.4 |
| waiter | 0.2.5 |
| waldo | 0.6.2 |
| webshot | 0.5.5 |
| whirl | 0.3.0 |
| whisker | 0.4.1 |
| withr | 3.0.2 |
| writexl | 1.5.4 |
| xfun | 0.52 |
| xml2 | 1.3.8 |
| xmlparsedata | 1.0.5 |
| xopen | 1.0.1 |
| xportr | 0.4.3 |
| xts | 0.14.1 |
| yaml | 2.3.10 |
| zephyr | 0.1.2 |
| zip | 2.3.3 |
| zoo | 1.8-14 |
| abind | 1.4-8 |
| askpass | 1.2.1 |
| assertthat | 0.2.1 |
| backports | 1.5.0 |
| base64enc | 0.1-3 |
| base64url | 1.4 |
| batchtools | 0.9.17 |
| bayesplot | 1.12.0 |
| BH | 1.87.0-1 |
| Biobase | 2.66.0 |
| BiocBaseUtils | 1.8.0 |
| BiocGenerics | 0.52.0 |
| BiocManager | 1.30.25 |
| BiocVersion | 3.20.0 |
| bit | 4.6.0 |
| bit64 | 4.6.0-1 |
| blob | 1.2.4 |
| brew | 1.0-10 |
| broom | 1.0.8 |
| bslib | 0.9.0 |
| cachem | 1.1.0 |
| callr | 3.7.6 |
| cellranger | 1.1.0 |
| checkmate | 2.3.2 |
| class | 7.3-23 |
| cli | 3.6.4 |
| clipr | 0.8.0 |
| coda | 0.19-4.1 |
| colorspace | 2.1-1 |
| colourpicker | 1.3.0 |
| commonmark | 1.9.5 |
| config | 0.3.2 |
| conflicted | 1.2.0 |
| cpp11 | 0.5.2 |
| crayon | 1.5.3 |
| crmPack | 1.0.6 |
| crosstalk | 1.2.1 |
| curl | 6.2.2 |
| data.table | 1.17.0 |
| DBI | 1.2.3 |
| dbplyr | 2.5.0 |
| DelayedArray | 0.32.0 |
| desc | 1.4.3 |
| digest | 0.6.37 |
| distributional | 0.5.0 |
| dplyr | 1.1.4 |
| DT | 0.33 |
| dtplyr | 1.3.1 |
| dygraphs | 1.1.1.6 |
| evaluate | 1.0.3 |
| fansi | 1.0.6 |
| farver | 2.1.2 |
| fastmap | 1.2.0 |
| fontawesome | 0.5.3 |
| forcats | 1.0.0 |
| fs | 1.6.6 |
| gargle | 1.5.2 |
| generics | 0.1.3 |
| GenomeInfoDb | 1.42.3 |
| GenomeInfoDbData | 1.2.13 |
| GenomicRanges | 1.58.0 |
| GenSA | 1.1.14.1 |
| getPass | 0.2-4 |
| ggplot2 | 3.5.2 |
| ggridges | 0.5.6 |
| glue | 1.8.0 |
| googledrive | 2.1.1 |
| googlesheets4 | 1.1.1 |
| gridExtra | 2.3 |
| gtable | 0.3.6 |
| gtools | 3.9.5 |
| haven | 2.5.4 |
| highr | 0.11 |
| hms | 1.1.3 |
| htmltools | 0.5.8.1 |
| htmlwidgets | 1.6.4 |
| httpuv | 1.6.15 |
| httr | 1.4.7 |
| httr2 | 1.1.2 |
| ids | 1.0.1 |
| igraph | 2.1.4 |
| inline | 0.3.21 |
| IRanges | 2.40.1 |
| isoband | 0.2.7 |
| jquerylib | 0.1.4 |
| jsonlite | 2.0.0 |
| knitr | 1.50 |
| labeling | 0.4.3 |
| later | 1.4.2 |
| lazyeval | 0.2.2 |
| lifecycle | 1.0.4 |
| litedown | 0.7 |
| lme4 | 1.1-37 |
| loo | 2.8.0 |
| lubridate | 1.9.4 |
| magick | 2.8.6 |
| magrittr | 2.0.3 |
| markdown | 2.0 |
| MatrixGenerics | 1.18.1 |
| matrixStats | 1.5.0 |
| memoise | 2.0.1 |
| mime | 0.13 |
| miniUI | 0.1.1.1 |
| minqa | 1.2.8 |
| modelr | 0.1.11 |
| MultiAssayExperiment | 1.32.0 |
| munsell | 0.5.1 |
| mvtnorm | 1.3-3 |
| nloptr | 2.2.1 |
| numDeriv | 2016.8-1.1 |
| odbc | 1.6.1 |
| openssl | 2.3.2 |
| pillar | 1.10.2 |
| pkgbuild | 1.4.7 |
| pkgconfig | 2.0.3 |
| plogr | 0.2.0 |
| plyr | 1.8.9 |
| posterior | 1.6.1 |
| prettyunits | 1.2.0 |
| processx | 3.8.6 |
| progress | 1.2.3 |
| promises | 1.3.2 |
| ps | 1.9.1 |
| purrr | 1.0.4 |
| QuickJSR | 1.7.0 |
| R6 | 2.6.1 |
| ragg | 1.4.0 |
| rappdirs | 0.3.3 |
| rbibutils | 2.3 |
| RColorBrewer | 1.1-3 |
| Rcpp | 1.0.14 |
| RcppEigen | 0.3.4.0.2 |
| RcppParallel | 5.1.10 |
| Rdpack | 2.6.4 |
| readr | 2.1.5 |
| readxl | 1.4.5 |
| reformulas | 0.4.0 |
| rematch | 2.0.0 |
| rematch2 | 2.1.2 |
| remotes | 2.5.0 |
| renv | 1.1.4 |
| reprex | 2.1.1 |
| reshape2 | 1.4.4 |
| rice | 3.0.1 |
| rjags | 4-17 |
| rlang | 1.1.6 |
| RMariaDB | 1.3.4 |
| rmarkdown | 2.29 |
| RPostgres | 1.4.8 |
| RPostgreSQL | 0.7-8 |
| RSQLite | 2.3.9 |
| rstan | 2.32.7 |
| rstanarm | 2.32.1 |
| rstantools | 2.4.0 |
| rstudioapi | 0.17.1 |
| rsvg | 2.6.2 |
| rvest | 1.0.4 |
| S4Arrays | 1.6.0 |
| S4Vectors | 0.44.0 |
| sass | 0.4.10 |
| scales | 1.3.0 |
| selectr | 0.4-2 |
| shiny | 1.10.0 |
| shinyjs | 2.1.0 |
| shinystan | 2.6.0 |
| shinythemes | 1.2.0 |
| sourcetools | 0.1.7-1 |
| SparseArray | 1.6.2 |
| StanHeaders | 2.32.10 |
| stringi | 1.8.7 |
| stringr | 1.5.1 |
| SummarizedExperiment | 1.36.0 |
| sys | 3.4.3 |
| systemfonts | 1.2.2 |
| tensorA | 0.36.2.1 |
| textshaping | 1.0.0 |
| threejs | 0.3.3 |
| tibble | 3.2.1 |
| tidyr | 1.3.1 |
| tidyselect | 1.2.1 |
| tidyverse | 2.0.0 |
| timechange | 0.3.0 |
| tzdb | 0.5.0 |
| UCSC.utils | 1.2.0 |
| utf8 | 1.2.4 |
| uuid | 1.2-1 |
| vctrs | 0.6.5 |
| viridisLite | 0.4.2 |
| vroom | 1.6.5 |
| withr | 3.0.2 |
| xml2 | 1.3.8 |
| xtable | 1.8-4 |
| xts | 0.14.1 |
| XVector | 0.46.0 |
| yaml | 2.3.10 |
| zlibbioc | 1.52.0 |
| zoo | 1.8-14 |
| base | 4.4.3 |
| boot | 1.3-31 |
| class | 7.3-23 |
| cluster | 2.1.8.1 |
| codetools | 0.2-20 |
| compiler | 4.4.3 |
| datasets | 4.4.3 |
| foreign | 0.8-90 |
| graphics | 4.4.3 |
| grDevices | 4.4.3 |
| grid | 4.4.3 |
| KernSmooth | 2.23-26 |
| lattice | 0.22-7 |
| MASS | 7.3-65 |
| Matrix | 1.7-3 |
| methods | 4.4.3 |
| mgcv | 1.9-3 |
| nlme | 3.1-168 |
| nnet | 7.3-20 |
| parallel | 4.4.3 |
| rpart | 4.1.24 |
| spatial | 7.3-18 |
| splines | 4.4.3 |
| stats | 4.4.3 |
| stats4 | 4.4.3 |
| survival | 3.8-3 |
| tcltk | 4.4.3 |
| tinytex | 0.57 |
| tools | 4.4.3 |
| utils | 4.4.3 |
| xfun | 0.52 |