NEWS.md
check_tu_rs_new_lesions
updated to include overall response of PMD
as an indicator of progressive disease. Visit info also added to check result. (#197)check_ae_fatal
updated to address bug that was causing warning. Logic was subsequently streamlined. (#215)--SEQ
variables were removed from checks. (#246)sdtmchecksmeta.RData
with descriptive update related to Progressive Metabolic Disease (“PMD”) inclusion in check_tu_rs_new_lesions
(#197)@family
and @keyword
for data check function categories OPHTH and COVID (#214) - applied to the following data checks:
check_tu_rs_new_lesions()
and more header examples added (#98)check_ae_aetoxgr()
(#187)xls2list()
reporting function to create a list from spreadsheet tabs using the {openxlsx} package (#85)sdtmchecksmeta.RData
saves as version=2 not version=3 for backwards compatibility with R < 3.5.0 when .RData loaded (#84)check_xx....R
) (#71)@title
of check_ae_aeacn_ds_disctx_covid()
, check_ae_aeacnoth_ds_stddisc_covid()
to be single line to address warning during package builddtc_dupl_early()
and fail()
in utils.RRoxygenNote
, and associated man/*.Rd files updated.@family
and @keyword
for functions in run_all_checks.R
, run_check.R
, utils.R
(#85)utils.R
to sdtmchecks-package.R
(#85)@harriscw
(#137, #144, #145, #155, #162), @J-Lox
(#147, #156), @laywang142
(#199, #158, #153, #146), @sarabodach
(#150, #151, #159, #160, #183)devtools::install_github("pharmaverse/sdtmchecks", ref = "main")
check_ds_multdeath_dsstdtc()
- flags if DS has multiple non-missing death dates in DSSTDTC that do not match (#62)n
function from {dplyr} in the header (#67):
sdtmchecksmeta.RData
(#63)sdtmchecksmeta.RData
to reference MedDRA v26.0 instead of v25.1 (#89)check_lb_lbstresu()
- add more text strings (NEGATIVE, POSITIVE, NOT DONE) allowed for LBORRES to reduce false positives (#27)check_tr_trstresn_ldiam()
- include a return message that summarizes total TR records that are missing, NOT DONE, NOT EVALUABLE to help with interpreting the output (#27)check_ae_aeacnoth_ds_disctx()
- corrected typo in return message (#56)util.R
create_R_script()
can use sdtmchecksmeta.RData
as input to programmatically generate an R script with function calls (#22)report_to_xlsx()
to generate the output results from selected data check functions as an .xlsx file including a tab for each check with potential discrepancies flagged and a summary page with conditional formatting to provide an overview of the results (#11)nickname.RData
and reference in data.R
, globals.R
(#12)convert_var_to_ascii()
from utils.R (#31)check_xx....R
) modified from Roche-specific version to include:
preproc=identity,...
) to allow company-specific pre-processingsdtmchecksmeta.RData
added to the data subdirectory; Roche-specific acronyms removed from descriptive textroche_utils.R
file for Roche-specific processing and to serve as a reference for implementation of company-specific pre-processingglobals.R
added with explicit list to pass through utils::globalVariables()
check_xx....R
functions consolidated from separate .R scripts into utils.R
:
check_ae_aeacnoth_ds_disctx()
flags if an AE record indicates person discontinued from study but there is no corresponding DS record indicating study discontinuation (where DS.DSSCAT = "STUDY COMPLETION/EARLY DISCONTINUATION" and DS.DSDECOD != "COMPLETED"
) (#3)