This checks looks for missing EXDOSE values when EXOCCUR="Y" or when EXOCCUR does not exist. It could be for a specified drug/treatment, or for all drugs/treatments in the dataset
check_ex_exdose_exoccur(EX, drug = NULL)Exposure SDTM dataset with variables USUBJID, EXTRT, EXSTDTC, EXDOSE, and optional variable EXOCCUR and optional variable VISIT
Drug name for EXTRT; used to subset the dataset. Default value is NULL (i.e. no filtering by drug)
Boolean value for whether the check passed or failed, with 'msg' attribute if the test failed
EX <- data.frame(
USUBJID = 1:3,
EXSEQ = 1:3,
EXSTDTC = 1:3,
EXTRT = c(1,2,NA),
EXOCCUR = "Y",
EXDOSE = 1:3,
VISIT = c("CYCLE 1 DAY 1", "CYCLE 2 DAY 1", "CYCLE 3 DAY 1")
)
check_ex_exdose_exoccur(EX)
#> [1] TRUE
EX$EXDOSE[3]=NA
check_ex_exdose_exoccur(EX)
#> [1] FALSE
#> attr(,"msg")
#> [1] "EX has 1 record(s) with missing EXDOSE when EXOCCUR = 'Y' (or EXOCCUR does not exist). "
#> attr(,"data")
#> USUBJID EXTRT VISIT EXSTDTC EXOCCUR EXDOSE
#> 1 3 NA CYCLE 3 DAY 1 3 Y NA
EX$EXVISIT = NULL
check_ex_exdose_exoccur(EX)
#> [1] FALSE
#> attr(,"msg")
#> [1] "EX has 1 record(s) with missing EXDOSE when EXOCCUR = 'Y' (or EXOCCUR does not exist). "
#> attr(,"data")
#> USUBJID EXTRT VISIT EXSTDTC EXOCCUR EXDOSE
#> 1 3 NA CYCLE 3 DAY 1 3 Y NA
EX$EXDOSE = NULL
check_ex_exdose_exoccur(EX)
#> [1] FALSE
#> attr(,"msg")
#> [1] "EX is missing the variable: EXDOSE"